PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515019.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 360aa    MW: 40538 Da    PI: 6.5982
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.1e-23116216198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +a+++         ++ +  tl  +d +g++W++++iyr++++r++lt+GW  Fv++++L +gD++vF   + +
  XP_016515019.1 116 FAKTLTQSDANNGGGFSVPRYCADTIfprldysADPPVQ--TLLAKDVHGKTWKFRHIYRGTPRRHLLTTGWTTFVNSKKLVAGDSIVFL--RAE 206
                     89*********************999****996555545..8999*********************************************..347 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++  +v+++r
  XP_016515019.1 207 NGDVCVGIRR 216
                     88889*9998 PP
2Auxin_resp106.72.6e-35261343183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++Fev+++Prast+eF vk+++ve+al+v+++ GmRfkmafe+eds    ++Gt+ +v+ +dp+rW++S+Wr+L+
  XP_016515019.1 261 AANLAASGQPFEVTFYPRASTPEFFVKASRVEAALQVRWCSGMRFKMAFENEDSTMSWFMGTICSVQVADPIRWTDSPWRLLQ 343
                     7899****************************************************999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.27E-29109231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-37109219IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-19115216No hitNo description
SMARTSM010191.9E-20116218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943116218IPR003340B3 DNA binding domain
PfamPF023622.4E-21116216IPR003340B3 DNA binding domain
PfamPF065074.4E-30261343IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MITSMEEEDK WLDSKFWHAC AGNMVELPAV NSIVFYFPQG HAEHACGNVE FRSEIRIPSY  60
IPCRVSGIKY MADQENDEVF AKIRMTPVSS NEVENVDDGV VAKSGLDNDQ EKPTSFAKTL  120
TQSDANNGGG FSVPRYCADT IFPRLDYSAD PPVQTLLAKD VHGKTWKFRH IYRGTPRRHL  180
LTTGWTTFVN SKKLVAGDSI VFLRAENGDV CVGIRRVKKG IADEHDTSFV APYGGFSAFL  240
RHDENKLMKR GKVKVESVIE AANLAASGQP FEVTFYPRAS TPEFFVKASR VEAALQVRWC  300
SGMRFKMAFE NEDSTMSWFM GTICSVQVAD PIRWTDSPWR LLQVTWDEPD LLQHVKCVNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-821234951373Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803255.10.0PREDICTED: auxin response factor 18-like
RefseqXP_009803256.10.0PREDICTED: auxin response factor 18-like
RefseqXP_016515019.10.0PREDICTED: auxin response factor 18-like, partial
SwissprotQ653H71e-166ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S4DPF20.0A0A1S4DPF2_TOBAC; Auxin response factor
TrEMBLA0A1U7YMN70.0A0A1U7YMN7_NICSY; Auxin response factor
STRINGXP_009803255.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-164auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]