PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016514970.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 456aa    MW: 51458.7 Da    PI: 7.0747
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016514970.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000187598123
                    EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                    + C+ Cgk Fs+   L  H+++ H
  XP_016514970.1 75 HICSECGKQFSSGKALGGHMSSaH 98
                    68******************9988 PP
2zf-C2H214.78.6e-05139158221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C  Cgk F++k +L  H+r
  XP_016514970.1 139 TCDLCGKNFPSKKSLFGHMR 158
                     7******************8 PP
3zf-C2H2130.00031383403323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C++Cgk+F+++  L  H ++H
  XP_016514970.1 383 CSICGKTFTSHQALGGHRSSH 403
                     **************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.81E-97397No hitNo description
SMARTSM003550.0457598IPR015880Zinc finger, C2H2-like
PfamPF139127.1E-107598IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.13875103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807798IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-9133160No hitNo description
Gene3DG3DSA:3.30.160.606.1E-4136160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.554138165IPR007087Zinc finger, C2H2
SMARTSM003550.002138160IPR015880Zinc finger, C2H2-like
PfamPF139126.2E-7140162IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SMARTSM003550.33381403IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201381408IPR007087Zinc finger, C2H2
PfamPF139121.0E-7383404IPR007087Zinc finger, C2H2
PROSITE patternPS000280383403IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEADNQEENH ELKSTKRSLQ EINRSCEKAV SSGDKSSLKV KIKMPKLKEE VVVVEEEEKE  60
INGIQEEIIL KKKDHICSEC GKQFSSGKAL GGHMSSAHVQ ANNREESWKN KQLKVNNYGQ  120
SSKRSRILVE EEDGVKKITC DLCGKNFPSK KSLFGHMRCH PDRDWRGMKP PNNKDNFKNK  180
GVLVFPANNS LDYDDDDDND DYFLNTQEYK ELHEIESASN INININVAPA FPKVDLKDCL  240
KSWAVKDKRG RSAKLSSISN SDDKELQDAV HQLIRLVNGV NNINSPKNRH TKTEELEVMC  300
SNSVTPDLPL KDKAKGKRKA DDIEDDYCSG IESKDCFVMA NKKRSMPDQK QQQQTQCNST  360
SGVCGRPDEK QQIKNVTPGK KMCSICGKTF TSHQALGGHR SSHNKFKMTI ENTIDQEIIK  420
SDTAKQDDGS EINIGNASKV LDFDLNELPD VDDCYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591959.10.0PREDICTED: uncharacterized protein LOC104088902
RefseqXP_016514970.10.0PREDICTED: uncharacterized protein LOC107831697
TrEMBLA0A1S4DNJ40.0A0A1S4DNJ4_TOBAC; uncharacterized protein LOC107831697
STRINGXP_009591959.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.19e-16C2H2 family protein