PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016514875.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 535aa MW: 57286.1 Da PI: 7.3998

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016514875.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128	9.8e-40	148	252	3	113
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ + s +ss+s+ s++ + XP_016514875.1 148 PPKKQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAP-------P 235 56899***************************************************************9997777777777744444.......3 PP TCP 97 skksqksaasalnlake 113 sk++++s ++al+la+ XP_016514875.1 236 SKSAPHSFHNALALAAA 252 33334444434444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.8E-38	152	246	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.791	153	207	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MELSDLQNNN TNSTSKQNNN NNTAPSQPLH HQHQHQYQLL SHHFQQQHGR SSAPFMTSIS 60 IQPSAPPGLT NSASPTPTAA TSASPSSSSP TPPPPQQQPP HLVDASLAIA TRSDSLIDSN 120 KKSQPQQQQL AIQQTQPVQQ QQQLQTQPPK KQTKDRHTKV DGRGRRIRMP AACAARVFQL 180 TRELGHKSDG ETIEWLLHQA EPAIIAATGT GTIPANFSTL NISLRSSGST LSAPPSKSAP 240 HSFHNALALA AAHHPSHPFE EGFSHMLGFH QNPHLLAPNP IAESIQGGGG GVSSGDGGGG 300 QEGTENYLRK RYREDLFKEE GSSNPQGEAS GGSSSPSNKQ FKGNSSQLPK PSQEAVAGPS 360 ASMLRHTNMM PATGLWAVAP PPTSGTTGSP FWMLPVTASG SGQTLSAPMA STSGTTTLES 420 QIWPFPMGSS NTMQAPLHFM PRFNIPTNLE FQSGRGNPLQ LGSMLMQQQQ HQQQPSQHLG 480 LGMSESNLGM LAALNAYSRS GLNMNSDHQS HSLEHHQQHQ PQPVDSEEDD PNNSQ

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MELSDLQNNN TNSTSKQNNN NNTAPSQPLH HQHQHQYQLL SHHFQQQHGR SSAPFMTSIS  60
IQPSAPPGLT NSASPTPTAA TSASPSSSSP TPPPPQQQPP HLVDASLAIA TRSDSLIDSN  120
KKSQPQQQQL AIQQTQPVQQ QQQLQTQPPK KQTKDRHTKV DGRGRRIRMP AACAARVFQL  180
TRELGHKSDG ETIEWLLHQA EPAIIAATGT GTIPANFSTL NISLRSSGST LSAPPSKSAP  240
HSFHNALALA AAHHPSHPFE EGFSHMLGFH QNPHLLAPNP IAESIQGGGG GVSSGDGGGG  300
QEGTENYLRK RYREDLFKEE GSSNPQGEAS GGSSSPSNKQ FKGNSSQLPK PSQEAVAGPS  360
ASMLRHTNMM PATGLWAVAP PPTSGTTGSP FWMLPVTASG SGQTLSAPMA STSGTTTLES  420
QIWPFPMGSS NTMQAPLHFM PRFNIPTNLE FQSGRGNPLQ LGSMLMQQQQ HQQQPSQHLG  480
LGMSESNLGM LAALNAYSRS GLNMNSDHQS HSLEHHQQHQ PQPVDSEEDD PNNSQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016514875.1	0.0	PREDICTED: transcription factor TCP8-like
TrEMBL	A0A1S4DN98	0.0	A0A1S4DN98_TOBAC; transcription factor TCP8-like
STRING	XP_009795828.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	8e-54	TCP family protein