PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016514251.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 892aa    MW: 97443.6 Da    PI: 6.7558
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016514251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.4e-19321420198
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k l+ sd+++ grlvlpkk+ae++    +  ++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  XP_016514251.1 321 FEKMLSASDAGRIGRLVLPKKCAEAYfppiS--NPEGLPLKVQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRIE-PE 411
                     89**************************543..556667***************9989999999***9.********************887.56 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     ++lv++ ++
  XP_016514251.1 412 GKLVMGCRK 420
                     656665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-30317421IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-19318417IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-23319420No hitNo description
PROSITE profilePS5086311.082321422IPR003340B3 DNA binding domain
PfamPF023622.2E-16321420IPR003340B3 DNA binding domain
SMARTSM010197.8E-23321421IPR003340B3 DNA binding domain
PROSITE profilePS5105013.676577627IPR011124Zinc finger, CW-type
PfamPF074965.7E-11582624IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    Send to blast
MSSSAAPSSA TKVCFNTNCN QFIERPKKGW RRRTGEFADL CDRCASAYDD GKFCETFHLK  60
TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILPERIK DVNNWNPIAG  120
SGPVPWRQAP SLFNGSAIQN ELQPRTPFLD ATGSVDRLCL GERPSALSSD NSRKDSCEKL  180
MNGKLKIGVP GTLENGYAGL NHEEPPKSCI SGPPQLSYAK NDLSAPSFSL TIGSSCKNEP  240
TDHSKVSISL QQQTTLSTPL GKQLGGHATV DYAGETQVRN SKTRVDGRGK HHLLPRYWPR  300
ITDEELQQIS GDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI SNPEGLPLKV  360
QDLKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DIVTFSRIEP EGKLVMGCRK  420
ASTTLTADQG SEACSNSNGV VTNGNVNTKS TKFSEEVLAN STKKGFSSTT HVAPADSTIG  480
WAETKLSDDM AMEFLGNNRS IPCKRKSSTL GSKSKRLRID NEDLVELKVT VVQAQGLMRP  540
PSSDAPTVIV IEGCEFEEYE QDAPIIGRPA IPSVDHLGEK IQWVQCEDCF KWRKVPDSAL  600
LPSRWTCSEN SWDSERSVCS ADQELTADHL RDLLPRINKA AKKMKASKQE TDVEALDGLD  660
ALANLAILDE GETLPASSQA TTKHPRHRPG CTCIVCIQPP SGKGPKHKQS CDCIVCKSVK  720
RRFKTLMLKR EKKLSEKEAE AACQKLQPQL AGQLLDAGDI QESNDDAGHF SPQRGELNNE  780
GYADDPNYPN EKKSSALPFK GEIDLNAKPE RDDELSPGSD SGSIMRILQV AAEQYVRHCE  840
NGSFTGNHEN GDGTGETNPN NCVIVGGTNQ TDVDHNRPLS IGTAASLAPN DQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-642994222125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-151HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016514251.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X3
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1S4DLH60.0A0A1S4DLH6_TOBAC; B3 domain-containing protein Os07g0563300-like isoform X3
STRINGXP_009794882.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-148high-level expression of sugar-inducible gene 2