PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016514250.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 907aa MW: 99096.5 Da PI: 6.786

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016514250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.9	4.5e-19	337	436	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd+++ grlvlpkk+ae++ + ++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e XP_016514250.1 337 FEKMLSASDAGRIGRLVLPKKCAEAYfppiS--NPEGLPLKVQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRIE-PE 427 89************************543..556667***********99899999999.*******************887.56 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++lv++ ++ XP_016514250.1 428 GKLVMGCRK 436 656665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.6E-30	333	437	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.31E-19	334	433	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.67E-23	335	436	No hit	No description
SMART	SM01019	7.8E-23	337	437	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.082	337	438	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-16	337	436	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.676	592	642	IPR011124	Zinc finger, CW-type
Pfam	PF07496	5.8E-11	597	639	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 907 aa Download sequence Send to blast
MSSSAAPSSA TKVCFNTNCN QFIERPKKGW RRRTGEFADL CDRCASAYDD GKFCETFHLK 60 TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILTPNPA WPPPSLFHPL 120 QPERIKDVNN WNPIAGSGPV PWRQAPSLFN GSAIQNELQP RTPFLDATGS VDRLCLGERP 180 SALSSDNSRK DSCEKLMNGK LKIGVPGTLE NGYAGLNHEE PPKSCISGPP QLSYAKNDLS 240 APSFSLTIGS SCKNEPTDHS KVSISLQQQT TLSTPLGKQL GGHATVDYAG ETQVRNSKTR 300 VDGRGKHHLL PRYWPRITDE ELQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE 360 AYFPPISNPE GLPLKVQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDIVT 420 FSRIEPEGKL VMGCRKASTT LTADQGSEAC SNSNGVVTNG NVNTKSTKFS EEVLANSTKK 480 GFSSTTHVAP ADSTIGWAET KLSDDMAMEF LGNNRSIPCK RKSSTLGSKS KRLRIDNEDL 540 VELKVTVVQA QGLMRPPSSD APTVIVIEGC EFEEYEDAPI IGRPAIPSVD HLGEKIQWVQ 600 CEDCFKWRKV PDSALLPSRW TCSENSWDSE RSVCSADQEL TADHLRDLLP RINKAAKKMK 660 ASKQETDVEA LDGLDALANL AILDEGETLP ASSQATTKHP RHRPGCTCIV CIQPPSGKGP 720 KHKQSCDCIV CKSVKRRFKT LMLKREKKLS EKEAEAACQK LQPQLAGQLL DAGDIQESND 780 DAGHFSPQRG ELNNEGYADD PNYPNEKKSS ALPFKGEIDL NAKPERDDEL SPGSDSGSIM 840 RILQVAAEQY VRHCENGSFT GNHENGDGTG ETNPNNCVIV GGTNQTDVDH NRPLSIGTAA 900 SLAPNDQ

Sequence ? help Back to Top

Protein Sequence Length: 907 aa Download sequence Send to blast

MSSSAAPSSA TKVCFNTNCN QFIERPKKGW RRRTGEFADL CDRCASAYDD GKFCETFHLK  60
TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILTPNPA WPPPSLFHPL  120
QPERIKDVNN WNPIAGSGPV PWRQAPSLFN GSAIQNELQP RTPFLDATGS VDRLCLGERP  180
SALSSDNSRK DSCEKLMNGK LKIGVPGTLE NGYAGLNHEE PPKSCISGPP QLSYAKNDLS  240
APSFSLTIGS SCKNEPTDHS KVSISLQQQT TLSTPLGKQL GGHATVDYAG ETQVRNSKTR  300
VDGRGKHHLL PRYWPRITDE ELQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE  360
AYFPPISNPE GLPLKVQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDIVT  420
FSRIEPEGKL VMGCRKASTT LTADQGSEAC SNSNGVVTNG NVNTKSTKFS EEVLANSTKK  480
GFSSTTHVAP ADSTIGWAET KLSDDMAMEF LGNNRSIPCK RKSSTLGSKS KRLRIDNEDL  540
VELKVTVVQA QGLMRPPSSD APTVIVIEGC EFEEYEDAPI IGRPAIPSVD HLGEKIQWVQ  600
CEDCFKWRKV PDSALLPSRW TCSENSWDSE RSVCSADQEL TADHLRDLLP RINKAAKKMK  660
ASKQETDVEA LDGLDALANL AILDEGETLP ASSQATTKHP RHRPGCTCIV CIQPPSGKGP  720
KHKQSCDCIV CKSVKRRFKT LMLKREKKLS EKEAEAACQK LQPQLAGQLL DAGDIQESND  780
DAGHFSPQRG ELNNEGYADD PNYPNEKKSS ALPFKGEIDL NAKPERDDEL SPGSDSGSIM  840
RILQVAAEQY VRHCENGSFT GNHENGDGTG ETNPNNCVIV GGTNQTDVDH NRPLSIGTAA  900
SLAPNDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	6e-64	315	438	2	125	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-151	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016514250.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2
Swissprot	Q0D5G4	0.0	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A1S4DLG5	0.0	A0A1S4DLG5_TOBAC; B3 domain-containing protein Os07g0563300-like isoform X2
STRING	XP_009794882.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-150	high-level expression of sugar-inducible gene 2