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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016514249.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 908aa MW: 99224.6 Da PI: 6.786 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.9 | 4.6e-19 | 337 | 436 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd+++ grlvlpkk+ae++ + ++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e XP_016514249.1 337 FEKMLSASDAGRIGRLVLPKKCAEAYfppiS--NPEGLPLKVQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRIE-PE 427 89**************************543..556667***************9989999999***9.********************887.56 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++lv++ ++ XP_016514249.1 428 GKLVMGCRK 436 656665554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-30 | 333 | 437 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-19 | 334 | 433 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.67E-23 | 335 | 436 | No hit | No description |
SMART | SM01019 | 7.8E-23 | 337 | 437 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-16 | 337 | 436 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.082 | 337 | 438 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.676 | 593 | 643 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 5.8E-11 | 598 | 640 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 908 aa Download sequence Send to blast |
MSSSAAPSSA TKVCFNTNCN QFIERPKKGW RRRTGEFADL CDRCASAYDD GKFCETFHLK 60 TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILTPNPA WPPPSLFHPL 120 QPERIKDVNN WNPIAGSGPV PWRQAPSLFN GSAIQNELQP RTPFLDATGS VDRLCLGERP 180 SALSSDNSRK DSCEKLMNGK LKIGVPGTLE NGYAGLNHEE PPKSCISGPP QLSYAKNDLS 240 APSFSLTIGS SCKNEPTDHS KVSISLQQQT TLSTPLGKQL GGHATVDYAG ETQVRNSKTR 300 VDGRGKHHLL PRYWPRITDE ELQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE 360 AYFPPISNPE GLPLKVQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDIVT 420 FSRIEPEGKL VMGCRKASTT LTADQGSEAC SNSNGVVTNG NVNTKSTKFS EEVLANSTKK 480 GFSSTTHVAP ADSTIGWAET KLSDDMAMEF LGNNRSIPCK RKSSTLGSKS KRLRIDNEDL 540 VELKVTVVQA QGLMRPPSSD APTVIVIEGC EFEEYEQDAP IIGRPAIPSV DHLGEKIQWV 600 QCEDCFKWRK VPDSALLPSR WTCSENSWDS ERSVCSADQE LTADHLRDLL PRINKAAKKM 660 KASKQETDVE ALDGLDALAN LAILDEGETL PASSQATTKH PRHRPGCTCI VCIQPPSGKG 720 PKHKQSCDCI VCKSVKRRFK TLMLKREKKL SEKEAEAACQ KLQPQLAGQL LDAGDIQESN 780 DDAGHFSPQR GELNNEGYAD DPNYPNEKKS SALPFKGEID LNAKPERDDE LSPGSDSGSI 840 MRILQVAAEQ YVRHCENGSF TGNHENGDGT GETNPNNCVI VGGTNQTDVD HNRPLSIGTA 900 ASLAPNDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 7e-64 | 315 | 438 | 2 | 125 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-151 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016514249.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X1 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A1S4DM46 | 0.0 | A0A1S4DM46_TOBAC; B3 domain-containing protein Os07g0563300-like isoform X1 | ||||
STRING | XP_009794882.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7128 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 1e-148 | high-level expression of sugar-inducible gene 2 |