PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016513926.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 387aa MW: 44015.6 Da PI: 6.1699

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016513926.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.7	9.7e-29	223	310	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p XP_016513926.1 223 FYNTYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVNSGKWVVTKFVKEHTHPLSP 310 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-26	223	310	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MDVVIRQIIH EIKQDIIEAF EVKLDDTLLT TSPVCGTAEA CGQPQMRRDE GKSEVVGAGA 60 LSHIRDRMGG WLDRRSEEMA ACAETLGQNL YKSCIYIQTA NHNLYSNVDI LQCGVFTLCF 120 KFFYVYKQIT DAIDATVDFV VDDHIIGEVE EGTVVEVRAV DENAVGGSSS EEALHDVHDV 180 KVDEDLSDRE VVPLEESQSL GNSTSDEPYV GQEFESEAAA HAFYNTYATR VGFIIRVSKL 240 SRSRRDGSAI GRALVCNKEG FRMPDKREKI VRQRAETRVG CRAMILVRKV NSGKWVVTKF 300 VKEHTHPLSP GKGRRDLIYD QYPNEHDKIR ELSQQLAAEK KRSATYKRHL EMIFEHIEEH 360 NQSLSKKIQD IVHNVREMES RDQHHHR

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MDVVIRQIIH EIKQDIIEAF EVKLDDTLLT TSPVCGTAEA CGQPQMRRDE GKSEVVGAGA  60
LSHIRDRMGG WLDRRSEEMA ACAETLGQNL YKSCIYIQTA NHNLYSNVDI LQCGVFTLCF  120
KFFYVYKQIT DAIDATVDFV VDDHIIGEVE EGTVVEVRAV DENAVGGSSS EEALHDVHDV  180
KVDEDLSDRE VVPLEESQSL GNSTSDEPYV GQEFESEAAA HAFYNTYATR VGFIIRVSKL  240
SRSRRDGSAI GRALVCNKEG FRMPDKREKI VRQRAETRVG CRAMILVRKV NSGKWVVTKF  300
VKEHTHPLSP GKGRRDLIYD QYPNEHDKIR ELSQQLAAEK KRSATYKRHL EMIFEHIEEH  360
NQSLSKKIQD IVHNVREMES RDQHHHR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016513926.1	0.0	PREDICTED: uncharacterized protein LOC107830790
TrEMBL	A0A1S4DKK4	0.0	A0A1S4DKK4_TOBAC; uncharacterized protein LOC107830790
STRING	XP_009764132.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11568	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-106	FAR1 family protein