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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016513536.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 29224.8 Da PI: 7.101 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.7 | 6.6e-11 | 183 | 242 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C............TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as.........kapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ + + + + a++Le+AveY+k Lq XP_016513536.1 183 SIAERVRRTRISDRIRKLQELVPSmDKlmqfmigtdFCYPQQTNTADMLEEAVEYVKFLQ 242 689*********************888*******9944556699***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.068 | 177 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-13 | 180 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.73E-10 | 181 | 246 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 182 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.2E-8 | 183 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-9 | 183 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MQRGSGGGSG LSRYRSAPAT WLEALLESDT ENEVVLNPSS PILHSPNKPP PHPSTTQQQL 60 PELVKPETRF TGDPGLFESG GSSNFLRQQS SPAEFLSHIN SDGYFSSYGI PSSLNYISQP 120 IKRPREDDSE SSPRKLSAHL KGEPSGQLRG SGGSLDAEME KLMDDLVPCK VRAKRGCATH 180 PRSIAERVRR TRISDRIRKL QELVPSMDKL MQFMIGTDFC YPQQTNTADM LEEAVEYVKF 240 LQKQIQELTE HQKKCTCSEK DQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 3e-73 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016513536.1 | 0.0 | PREDICTED: transcription factor bHLH81-like isoform X1 | ||||
Swissprot | Q9C8P8 | 1e-64 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A1S4DJF8 | 0.0 | A0A1S4DJF8_TOBAC; transcription factor bHLH81-like isoform X1 | ||||
STRING | XP_009605832.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11787 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 1e-51 | bHLH family protein |