PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513409.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 430aa    MW: 49722 Da    PI: 6.316
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.68.1e-2462170186
        trihelix   1 rWtkqevlaLiearremeerlrrgk......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 
                     +Wt+++v++Li ++ +++++++++                       +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +
  XP_016513409.1  62 KWTDNMVRLLIMVVYYIGDEVGSEVnnnnnndtnnskkkgggsvgvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtA 156
                     7**************7777777532234466777888999999**************************************************55 PP

        trihelix  73 sessstcpyfdqle 86 
                     ++++++  +++ ++
  XP_016513409.1 157 CRVVENQNLLETMD 170
                     9*******999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2060196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
HPIVSYGHQE TENQQQQQQQ SLRQGLPFNK AKNQSLTFSD DDDNNSVEDG KKSKTCPWQR  60
MKWTDNMVRL LIMVVYYIGD EVGSEVNNNN NNDTNNSKKK GGGSVGVLQK KGKWKSVSRA  120
MMERGFYVSP QQCEDKFNDL NKRYKRVNDI LGKGTACRVV ENQNLLETMD HLTQKMKEEV  180
KKLLNSKHLF FREMCAYHNS CGHNNTSTGG GSDIGNVQLS TEMAVEANSQ AQKRCLHSSE  240
NARIEVHLEE GTKMAKGKSV DDDQEDDDED EDEDEEDNED ELSGARGHDN HHSHEYDDDM  300
DERSRKRQRK SGSLSPMVQQ LSSELANVIQ DGGRSSIEKR QWLKTRMVQL EEQHVGYLCQ  360
AFELQKQRLK WEKFTSKKER EMEKEKLINE RKKLENERMV LLLRQKELEL LDFHQHQNHN  420
RNSDPSSVTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513409.10.0PREDICTED: ESF1 homolog, partial
TrEMBLA0A1S4DJE60.0A0A1S4DJE6_TOBAC; ESF1 homolog
STRINGXP_009788508.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.16e-95sequence-specific DNA binding transcription factors