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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_016513364.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | bHLH | ||||||||
| Protein Properties | Length: 206aa MW: 22409.9 Da PI: 10.1848 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 19.6 | 1.7e-06 | 3 | 31 | 22 | 55 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
L++l+P+a K +Ka++L ++++Y+k+Lq
XP_016513364.1 3 ALQKLVPNA-----SKTDKASMLDEVIKYLKQLQ 31
799*****9.....7******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 3.14E-9 | 1 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.3E-7 | 1 | 39 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 2.07E-7 | 1 | 35 | No hit | No description |
| PROSITE profile | PS50888 | 11.788 | 1 | 30 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 206 aa Download sequence Send to blast |
MKALQKLVPN ASKTDKASML DEVIKYLKQL QAQIQLISSA RNMESQMMMQ LPLGMQLPHI 60 QMPLLARMGM GVNLGMTPGM LNNMTANLAR AAATTPHQSL TAPFIYPTSI ATSCPPFMSP 120 AFAMAPTIPT PPQANGDASA SRAAVASSVT NSFPFNDPRS AFLAQSMNME FNNQLAAQYM 180 QQADNQSMQT RSKNLNQGNL NQRQTE |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009801833.1 | 1e-146 | PREDICTED: transcription factor PIF7 | ||||
| Refseq | XP_016513364.1 | 1e-147 | PREDICTED: transcription factor UNE10-like | ||||
| TrEMBL | A0A1S4DJA0 | 1e-145 | A0A1S4DJA0_TOBAC; transcription factor UNE10-like | ||||
| TrEMBL | A0A1U7YFB6 | 1e-145 | A0A1U7YFB6_NICSY; transcription factor PIF7 | ||||
| STRING | XP_009801833.1 | 1e-145 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA5437 | 17 | 32 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G00050.1 | 8e-15 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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