PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513354.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 475aa    MW: 53832.4 Da    PI: 8.6733
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001284103221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C+ CgksF ++ +L  H++
  XP_016513354.1  84 VCKECGKSFQSWKSLFGHMK 103
                     6******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-4531IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.055931IPR007087Zinc finger, C2H2
SMARTSM003550.016931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.4E-10931No hitNo description
PfamPF139127.1E-7932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576675.4E-1078105No hitNo description
SMARTSM003550.01183105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.30583110IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-484107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
PfamPF139128.6E-885107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.91E-7319341No hitNo description
PROSITE profilePS5015710.679319346IPR007087Zinc finger, C2H2
SMARTSM003550.085319341IPR015880Zinc finger, C2H2-like
PfamPF139126.5E-11319343IPR007087Zinc finger, C2H2
PROSITE patternPS000280321341IPR007087Zinc finger, C2H2
SuperFamilySSF576671.91E-7385412No hitNo description
SMARTSM003550.16390412IPR015880Zinc finger, C2H2-like
PfamPF139128.7E-10390413IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743390412IPR007087Zinc finger, C2H2
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MKEDQELKYI CKFCNKSFPC GRSLGGHMRS HLINSSIDQT KKKLPFIESS SPIADYGLRE  60
NPKKTSKFAE SSEDTNLVPN QNKVCKECGK SFQSWKSLFG HMKCHSEKII SSMNSTVEED  120
PWNNNANYAI QNQVMDIQSD TETATPNKKK RSSRKFKRYI TTTTSSTVTE IEQEQEEVAM  180
SLIILSRDSR NGVGLNLFTD ENGSKNSKCK DGELVKLKKV KNGKPEKNER SKSDARTLRI  240
SRNGYNMDKS EESDDKKKKI KEDKENGFEE SEIEVHYKLA KGSYSKKRNI EMNECDISVD  300
SNTKKLRDQD SDSEKKIKFE CTACNKSFHS YQALGGHRAS HKRTKGCENI IDEIEHMQNL  360
AADNKITNTK NSSNDSTIET SSVSKKLKGY ECPICFKIFQ SGQALGGHKR SHLIAEAKSN  420
NQAVILQKPT PEIRDFLDLN LPAPVEEESN EHVGFQTWWI GSSHKHEQLV GLISN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0066062e-94AB006606.1 Petunia x hybrida mRNA for ZPT4-4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801846.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_016513354.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S4DJ900.0A0A1S4DJ90_TOBAC; zinc finger protein ZAT9-like
TrEMBLA0A1U7YIT40.0A0A1U7YIT4_NICSY; zinc finger protein ZAT9-like
STRINGXP_009801846.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-26C2H2-like zinc finger protein