PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513302.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20709.2 Da    PI: 10.2715
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.41e-091554140
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    k+ ++k+  +v + + ++ + K A  LS+LC++++a+iif
  XP_016513302.1 15 KFLKDKRAEKVALFNKQKALSKRAMDLSILCGIDIAIIIF 54
                    57789999*******************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0049166IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.105767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-13979IPR002100Transcription factor, MADS-box
PfamPF003191.3E-71855IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MARMTSQMKN KSEKKFLKDK RAEKVALFNK QKALSKRAMD LSILCGIDIA IIIFPITAER  60
FMFGNPNVES VVERFSQAKQ PFYRMLSRKT THEKAGCGDE KDTMKKKKKK AINEKEKGES  120
TLEIFKPTNL ERLEKLKQEI DELERDLTEK IDEVRSKIGV TDPKFLPEMN ATMSSAMPSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513302.11e-128PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1S4DIW31e-127A0A1S4DIW3_TOBAC; agamous-like MADS-box protein AGL29
STRINGXP_009597574.19e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258