PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016513209.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 742aa MW: 85621.5 Da PI: 9.1498

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016513209.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.3	2.6e-23	36	124	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++YneYA++vGFsvrk++ +++k+ g +t+r+ +C keg+r+++k+k ++ ++ r etrtg +a++ v++++ gk+++tk++leHnH+l+ XP_016513209.1 36 NYYNEYARRVGFSVRKEYINTNKELGYVTSRKITCFKEGFRRDDKRK-DQVKKLRRETRTGYQAHIIVTRHSMGKYHITKVKLEHNHALV 124 69****************************************999.999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-20	36	124	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.9E-25	216	303	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MCENSPEEVL QSNSQGTVDY EPKLGLEFDS DKDALNYYNE YARRVGFSVR KEYINTNKEL 60 GYVTSRKITC FKEGFRRDDK RKDQVKKLRR ETRTGYQAHI IVTRHSMGKY HITKVKLEHN 120 HALVSPTMVH MLPSHRRINE VQAHEIDLAE DAGLFSKTTF DFMSLQDGGR VNLGYTKLNQ 180 KNYLRTKRQK AMRRGETGVL LKYFEKKRIE DPSLFFATNR EHKPLASFVG LNNHRKMVVF 240 EGALMYDETA DFFQWLFETF LGAMSEKNPK IIFTDQDAAI SKAISLVMPE VYHRLCVWHM 300 EQNAAKHLKQ IYKRYASFRG DFRKCIYEYE DEHMENKSGG MNNTQLSESL NGDLKDYLQS 360 DYNLVQFFKY YDRAIEDKRY NELQDTCDAS QHILVLKAQV PILIHAREVY TSNIFAKFQD 420 EYMKSLSIKV NIGCGKNILS TIYNVSKHGH TREYIVTVTE VGHISYTCLK FESMGILCCD 480 AIRVLDVVKG VSRIPTEHIL DRWTKNAKGV NIKEVDEQEI EIKDPKLITM NRYRVLCPIF 540 VRMVAKTSKT DDGYKVVVAC ANELSSKLKQ IAEVSTPSFC TSGSTRDLPE ENNNIIILTR 600 AKNLKKKDGK RHKKRIKPSL EVNANCKKAR GNKSSSAKQD GPRVDDRALS DNDKYFIQNP 660 ISKGNIYENS DLSTSQTITC ASLSHSSEFS LSLPYPNFTQ MLTEPFSLDT FAHVQKSYLF 720 FHDQANLFES RGSQKFQDNN TL

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MCENSPEEVL QSNSQGTVDY EPKLGLEFDS DKDALNYYNE YARRVGFSVR KEYINTNKEL  60
GYVTSRKITC FKEGFRRDDK RKDQVKKLRR ETRTGYQAHI IVTRHSMGKY HITKVKLEHN  120
HALVSPTMVH MLPSHRRINE VQAHEIDLAE DAGLFSKTTF DFMSLQDGGR VNLGYTKLNQ  180
KNYLRTKRQK AMRRGETGVL LKYFEKKRIE DPSLFFATNR EHKPLASFVG LNNHRKMVVF  240
EGALMYDETA DFFQWLFETF LGAMSEKNPK IIFTDQDAAI SKAISLVMPE VYHRLCVWHM  300
EQNAAKHLKQ IYKRYASFRG DFRKCIYEYE DEHMENKSGG MNNTQLSESL NGDLKDYLQS  360
DYNLVQFFKY YDRAIEDKRY NELQDTCDAS QHILVLKAQV PILIHAREVY TSNIFAKFQD  420
EYMKSLSIKV NIGCGKNILS TIYNVSKHGH TREYIVTVTE VGHISYTCLK FESMGILCCD  480
AIRVLDVVKG VSRIPTEHIL DRWTKNAKGV NIKEVDEQEI EIKDPKLITM NRYRVLCPIF  540
VRMVAKTSKT DDGYKVVVAC ANELSSKLKQ IAEVSTPSFC TSGSTRDLPE ENNNIIILTR  600
AKNLKKKDGK RHKKRIKPSL EVNANCKKAR GNKSSSAKQD GPRVDDRALS DNDKYFIQNP  660
ISKGNIYENS DLSTSQTITC ASLSHSSEFS LSLPYPNFTQ MLTEPFSLDT FAHVQKSYLF  720
FHDQANLFES RGSQKFQDNN TL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	81	RRDDKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016513209.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S4DIU7	0.0	A0A1S4DIU7_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009799716.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2693	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-73	FAR1-related sequence 5