PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016513020.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 219aa MW: 25364.7 Da PI: 9.558

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016513020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.9	6.9e-17	35	124	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k +++s+v++ +l+lp+ f++ h ++ ++t+tl des ++++ k+ ++++ l++GW++F a++L egD++vF+l + + l+v XP_016513020.1 35 FMKPMIRSNVTAGFWLSLPRFFCQLHL--PRHDTTVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLAHNLVEGDVLVFQLFRFCK--LKVY 121 89*******************8884..35678************555555....9********************865344..4777 PP EE- CS B3 96 vfr 98 ++r XP_016513020.1 122 IVR 124 766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-19	27	126	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.82E-22	28	126	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.12E-24	33	124	No hit	No description
PROSITE profile	PS50863	12.083	35	126	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.4E-15	35	125	IPR003340	B3 DNA binding domain
SMART	SM01019	4.1E-19	35	126	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MAMMQNLYGR FDLASSAKYR AEEVQSRLST KYPSFMKPMI RSNVTAGFWL SLPRFFCQLH 60 LPRHDTTVTL VDESQEEYKT KYLAERNGLS GGWRGFSLAH NLVEGDVLVF QLFRFCKLKV 120 YIVRANYLAE VDAALVLLHL DAHQKQANPE QCTKCRIIEV RNKVESSVKD FPHNEKRMII 180 LQKKTCYTNI VIQGICSRIL TCLQKLQDLP TKILALWML

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	2e-62	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016513020.1	1e-165	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Swissprot	Q1G3M3	4e-42	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A1S4DI00	1e-164	A0A1S4DI00_TOBAC; B3 domain-containing protein At5g42700-like isoform X1
STRING	XP_009778967.1	1e-106	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13184	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-44	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]