PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016513019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 498aa MW: 56160.1 Da PI: 5.2365 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.3 | 8.7e-16 | 89 | 178 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k ++ps+v+ +l +pkkf+++h +k + t++l de+ +++ k+ ++k++ l++GW++F a+ L gD+++F+l++ +f +v XP_016513019.1 89 FAKFMLPSHVTGGFWLGFPKKFCDRHL-PK-HDDTVVLVDEDEQEYATKYLVDKTG----LSGGWRGFSIAHSLLHGDVLIFQLIQPCKF--KVY 175 8899**********************4.33.3459***************888888....*************************98888..666 PP EE- CS B3 96 vfr 98 ++r XP_016513019.1 176 MIR 178 665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.73E-22 | 83 | 179 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-18 | 83 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.83E-24 | 87 | 178 | No hit | No description |
SMART | SM01019 | 2.4E-19 | 89 | 180 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.801 | 89 | 180 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-13 | 89 | 178 | IPR003340 | B3 DNA binding domain |
Pfam | PF05266 | 1.7E-9 | 376 | 478 | IPR007930 | Protein of unknown function DUF724 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MAISAMYSSK KSPLLSSFKK KALEIKKKLL RKRVLGPSQT YKRENGDNKK VQLCHEKKAN 60 KPSTVDANSS AMLRAEEVQA NLPSQFPSFA KFMLPSHVTG GFWLGFPKKF CDRHLPKHDD 120 TVVLVDEDEQ EYATKYLVDK TGLSGGWRGF SIAHSLLHGD VLIFQLIQPC KFKVYMIRES 180 TLTELDGAIS LLNLDFHARP IESDQIEDMK ICEAKELRYL EPPVLDTHQD DKQEIDGAIS 240 LLKLDFRARP IKSDQDEGMN ICEAKEEKYL EPSVIDIDQD DENEEAILVQ NLDQGAASDQ 300 CGNDNDISSE VLGIRFSESR LEFKDVKDFS GFNILVDGLI VDSEIPAHIR NKYYDLCCTQ 360 KSFLHDHLLG GLNCKLAAGM ITETVNIADA IRASNISTSR DYLEAWDNTL KGFECLGMEV 420 GFLRARLNKL VSLSSEPQQI LESKRNELVE AKEEMRNLET KLLKVKQVIK NLDSEIDLTT 480 KDASFELKFK AVAAAPWS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016513019.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A1S4DIB1 | 0.0 | A0A1S4DIB1_TOBAC; B3 domain-containing protein Os01g0234100-like | ||||
STRING | XP_009778963.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3023 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 6e-40 | B3 family protein |