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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016512205.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 442aa MW: 48568.9 Da PI: 8.6002 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 129.4 | 3.7e-40 | 58 | 211 | 2 | 137 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i el+++++ + ++ +++++ss++ +++ + XP_016512205.1 58 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAAPSISELPSLNAFPDTQQiSEDKRSSAGTEQGLDsaevemd 152 689*************************************************************5555533333333333333222224556666 PP TCP 89 .........kaaksaakskksqksaasalnlak.esrakarararertrekmriknkln 137 + +++a+s+ s++s+ s l+l++ e r kar+rarer +ek + k+k+n XP_016512205.1 153 gdpnyqhqhVSLSKSACSSTSETSKGSGLSLSRsENRVKARERARERAAEKEKEKEKEN 211 6777778765666666999999999999*****9*******************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.9E-41 | 59 | 206 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.181 | 60 | 118 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.972 | 186 | 205 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MEVDEIQKQG CKFPRISNEN GRFESQDENG AVKGSHGLGG GRLCGWPSNR IVRVSRASGG 60 KDRHSKVWTS KGLRDRRVRL SVNTAIQFYD LQDRLGYDQP SKAVEWLLKA AAPSISELPS 120 LNAFPDTQQI SEDKRSSAGT EQGLDSAEVE MDGDPNYQHQ HVSLSKSACS STSETSKGSG 180 LSLSRSENRV KARERARERA AEKEKEKEKE NESTRTAHHQ NVPRISQNSS FTELLTGGMN 240 SNNNTNTCNG RGSETNLFNK SPRQWSSSPF EYFPSGLLGL RGNDNSTSGF QAQIHLGNPI 300 QQQPQPLPMS SPMFSITRDH HPELQHFPFV SDHLGTNGHA SNSANEYNLN FSISSSSSSG 360 LAGYNRGTLQ SNSSSLFPHF QRYEGSQSFF NGSTIAAATA PNNTAAASVD NHHHFLSAYD 420 AGRLQLFYND SRHSDQKGKG KN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-24 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 9e-24 | 65 | 119 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016512205.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
TrEMBL | A0A1S4DFF7 | 0.0 | A0A1S4DFF7_TOBAC; transcription factor TCP2-like | ||||
STRING | XP_009588486.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2464 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 8e-38 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |