PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016511956.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 486aa MW: 54147.5 Da PI: 6.2586 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.1 | 3.3e-13 | 306 | 349 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+ri+++++ Lr l+P+ + K++K++iL A++YI++L+ XP_016511956.1 306 VTERKRRNRIKDGLFALRALVPNiS------KMDKVAILGDAIDYINELE 349 57*********************66......****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.7E-17 | 8 | 159 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 1.04E-13 | 297 | 353 | No hit | No description |
PROSITE profile | PS50888 | 15.605 | 299 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.09E-16 | 301 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-14 | 305 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-17 | 306 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.2E-11 | 307 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MERALEWLRP LVDSNNWEYC VVWKLGDDPS RFIEWIGCCC SGAKAVDVNV KKENGGQLTF 60 TTLCRDSQIQ HPIRTKACEA LAHFPLSISL YSGIQGEVVT SNEPKWIIHT EVSNSTLSHY 120 PWQELKGTLV LIPVAGGLVE IYNSKLIYKD QKTIDFIINR FKHGSEKASS SSAKKEDQAL 180 DSFPLEKLSF CAPLLQYTSF PSSAPLISQV SESSANPSIQ GSPTCSIPSN ELTLCHSTSD 240 NLSRNIPLSQ SSDVYFEHTE LQCSGNLSRM EGAVFPWNQE NYIIAGDVYT MGKKRQRGPY 300 QSKNLVTERK RRNRIKDGLF ALRALVPNIS KMDKVAILGD AIDYINELEE NVKLYQVELN 360 ELAAEVSKNE SSEVVLSDMS EMSKVTGPTN EKTQISINTT KRTRMEGQVE VNQIGAREFL 420 LKVSGSHKPG GFTQLMEAMN SLGLEVVNTN FTTFGGEILS IFIARANMHR VVEAQQLRSS 480 LIELTS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 291 | 297 | GKKRQRG |
2 | 292 | 311 | KKRQRGPYQSKNLVTERKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-160 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009590722.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES isoform X2 | ||||
Refseq | XP_016511956.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like | ||||
TrEMBL | A0A1S4DF42 | 0.0 | A0A1S4DF42_TOBAC; transcription factor ABORTED MICROSPORES-like | ||||
STRING | XP_009590722.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9929 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10610.1 | 2e-78 | bHLH family protein |