PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016511682.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 268aa MW: 30508.2 Da PI: 7.9548

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016511682.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.8	3e-11	100	152	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h +Er RR+++ + + Lr+llP + ++K s ++ + Av+YI++L+ XP_016511682.1 100 KKVVHRNVERHRRQEMANLLTSLRSLLPLEF--IKGKRSASDHMQIAVNYIRHLR 152 6788***********************65..******************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.46E-14	96	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.76E-9	97	156	No hit	No description
PROSITE profile	PS50888	13.211	99	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-8	100	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-10	100	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0013	105	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDNYLWEIFS SKQNTEQDHD HHHQLLQIPN FQLNGFCQQD QIPNQDLIGG PREISSVNSN 60 NNYASVPTTM SSVNRSNLDN SNKGLIRRPE STISSTDDSK KVVHRNVERH RRQEMANLLT 120 SLRSLLPLEF IKGKRSASDH MQIAVNYIRH LRKNIEELDN RRKQIKNSLD NLGAENGSSS 180 TCYVHNNSVA VNTCQDGMEI LINVNSHKEE MFSLSKVLRW LLQQGLNVVS CVNSKQDEWT 240 LIRIQCQVSD ISGVSTVGLQ KKLTDLIS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	4e-39	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016511682.1	0.0	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A1S4DE25	0.0	A0A1S4DE25_TOBAC; transcription factor bHLH118-like
STRING	XP_009757518.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	2e-24	bHLH family protein