PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016511409.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 782aa MW: 86116 Da PI: 6.216

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016511409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.1	3.9e-19	277	376	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ + ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++++ +++ XP_016511409.1 277 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSDGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFSRID-PGGK 369 99************************556666778***********99899999999.*******************887.7887 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_016511409.1 370 LVMGFRK 376 8888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.23E-21	274	377	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.4E-29	274	380	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.24E-24	275	376	No hit	No description
SMART	SM01019	3.1E-22	277	377	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-16	277	376	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.237	277	378	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.76	482	536	IPR011124	Zinc finger, CW-type
Pfam	PF07496	3.4E-10	487	533	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MGDSGWRECK MCGKHLHCGC IASKYLFEYL DFGGVGCISC ARCLDDHSMR PMQVPADDFR 60 DSAFGTNFIQ PLHVEKGVDK TNFDKGRLPI VNNIMEISEP GQPFQSQKDE NNVSLGKTKQ 120 EKVLPVGDVS TCFSNLNQQS IASLFREQDN SKPNQGVKEM YDTTNQPSLD FSLSTPVGCS 180 SSGLSFPDGG VEGREHEKTP FQQGLRTRHI LLKPLKPSPS FGSDSNKELP SQTRIARPPA 240 EGRGGRNQLL PRYWPRITDQ ELCQLSGDLN SAIVPLFEKV LSASDAGRIG RLVLPKACAE 300 AYFPPINQSD GLPIRIQDIK GKEWTFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDTVT 360 FSRIDPGGKL VMGFRKATNS VETQDPQSSH LPDGSGSADT SFTGLTENLN KKTTNIGSKN 420 KRLLMHADDA MELRITWEES QELLRPPPTT QPTILVIEDC EFEAYDEPPV FGKQTIFTSR 480 PSGDQEQWAQ CDSCSKWRRL PMHVLLPPKW TCSDNIWDSN SFLYRCSCSA PEEIKAKELE 540 AFFRVSKGHK RQKIAGKNED CEPSGLNALA TVAVLGDSIS DLGEPLVGAT TKHPRHRPGC 600 TCIVCIQPPS GKGKHQPTCK CNACLSAERR FKTLMLRKKK KQSEREAEVA QAKDQVPPKD 660 GSETDGASGA ELMMQTSHSE NERNTNGDHM EKVGAGKGQL DLNCHPNRED EMLIEAAAGI 720 SMTSLINAAD LPLDMYQTQN GLATLDKCLL SLATAGSEGQ QPDNGCVRPA DAQVQENNGD 780 NG

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MGDSGWRECK MCGKHLHCGC IASKYLFEYL DFGGVGCISC ARCLDDHSMR PMQVPADDFR  60
DSAFGTNFIQ PLHVEKGVDK TNFDKGRLPI VNNIMEISEP GQPFQSQKDE NNVSLGKTKQ  120
EKVLPVGDVS TCFSNLNQQS IASLFREQDN SKPNQGVKEM YDTTNQPSLD FSLSTPVGCS  180
SSGLSFPDGG VEGREHEKTP FQQGLRTRHI LLKPLKPSPS FGSDSNKELP SQTRIARPPA  240
EGRGGRNQLL PRYWPRITDQ ELCQLSGDLN SAIVPLFEKV LSASDAGRIG RLVLPKACAE  300
AYFPPINQSD GLPIRIQDIK GKEWTFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDTVT  360
FSRIDPGGKL VMGFRKATNS VETQDPQSSH LPDGSGSADT SFTGLTENLN KKTTNIGSKN  420
KRLLMHADDA MELRITWEES QELLRPPPTT QPTILVIEDC EFEAYDEPPV FGKQTIFTSR  480
PSGDQEQWAQ CDSCSKWRRL PMHVLLPPKW TCSDNIWDSN SFLYRCSCSA PEEIKAKELE  540
AFFRVSKGHK RQKIAGKNED CEPSGLNALA TVAVLGDSIS DLGEPLVGAT TKHPRHRPGC  600
TCIVCIQPPS GKGKHQPTCK CNACLSAERR FKTLMLRKKK KQSEREAEVA QAKDQVPPKD  660
GSETDGASGA ELMMQTSHSE NERNTNGDHM EKVGAGKGQL DLNCHPNRED EMLIEAAAGI  720
SMTSLINAAD LPLDMYQTQN GLATLDKCLL SLATAGSEGQ QPDNGCVRPA DAQVQENNGD  780
NG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-69	255	384	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016511409.1	0.0	PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X2
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A1S4DDX5	0.0	A0A1S4DDX5_TOBAC; B3 domain-containing protein Os07g0679700-like isoform X2
STRING	XP_009595178.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]