PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016511359.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 19656.1 Da PI: 7.3698 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.9 | 1.3e-41 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C+++C +apyf +++pkkf nvhk+FGasnv+k+l+++p+++red+++slvyeAe+r+rdPvyG++g i +lq+++ +l+++l XP_016511359.1 11 SCAACKFLKRRCTSNCQFAPYFRSDEPKKFTNVHKVFGASNVIKILNEVPQDQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRKMVELQHDLM 105 6********************************************************************************************99 PP DUF260 96 llkee 100 +++++ XP_016511359.1 106 VTRAH 110 98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.397 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.2E-41 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MKSNESRSSS SCAACKFLKR RCTSNCQFAP YFRSDEPKKF TNVHKVFGAS NVIKILNEVP 60 QDQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQRKMVEL QHDLMVTRAH LAYYEAKPRP 120 STSCSFLDYD PLNVNVPSVF VDTSLSGGFL DNFSQNSFGM DHSGSTNEFG QFPFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-44 | 8 | 114 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-44 | 8 | 114 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009623318.1 | 1e-129 | PREDICTED: LOB domain-containing protein 21-like | ||||
Refseq | XP_016511359.1 | 1e-129 | PREDICTED: LOB domain-containing protein 21-like | ||||
Swissprot | Q9SRL8 | 3e-55 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A1S4DDS3 | 1e-128 | A0A1S4DDS3_TOBAC; LOB domain-containing protein 21-like | ||||
STRING | XP_009623318.1 | 1e-129 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 2e-52 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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