![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016511349.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 206aa MW: 23320.4 Da PI: 5.0925 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.3 | 1e-16 | 1 | 57 | 37 | 97 |
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +l+d+ grsW+v + +k+++ +++ +GW +Fv++n+Lk g+f++F+++g+s+f +vk++ XP_016511349.1 1 MLQDLAGRSWKVVV--EKNDNDFFFMGGWPDFVRDNNLKFGEFLTFSYVGNSNF--YVKIY 57 699***********..**********************************9999..88886 PP | |||||||
2 | B3 | 43.7 | 5e-14 | 113 | 204 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++++ +++rl + f +++ + ++++ l++ + sW v + +s+r +l++G eF +n L+egD++ F+l+++++f l v+++ XP_016511349.1 113 VIKPSYIRKKRLNVQAAFGNRYlnR-GQGQNFEAALQT-DRGSWPVSV---HNSDRLILQTGFGEFIASNALREGDVCQFMLIDEEKFMLEVSIR 202 45677777788********999962.456889999887.6679*****...677899*************************************9 PP -S CS B3 98 rk 99 r+ XP_016511349.1 203 RQ 204 85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02362 | 8.5E-15 | 1 | 57 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0015 | 1 | 60 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.256 | 1 | 60 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-15 | 2 | 60 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-17 | 2 | 60 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.48E-15 | 2 | 57 | No hit | No description |
CDD | cd10017 | 1.54E-9 | 108 | 203 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-13 | 108 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.86E-11 | 108 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.8E-5 | 110 | 205 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-12 | 113 | 204 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.445 | 153 | 205 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MLQDLAGRSW KVVVEKNDND FFFMGGWPDF VRDNNLKFGE FLTFSYVGNS NFYVKIYGIN 60 GSLKRDVTAI KEPELHPLDE EIVQEIGTAA PPADQALNGS GDLVVYAPSF DIVIKPSYIR 120 KKRLNVQAAF GNRYLNRGQG QNFEAALQTD RGSWPVSVHN SDRLILQTGF GEFIASNALR 180 EGDVCQFMLI DEEKFMLEVS IRRQLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016511348.1 | 1e-151 | PREDICTED: B3 domain-containing protein At3g06220-like isoform X1 | ||||
Refseq | XP_016511349.1 | 1e-152 | PREDICTED: B3 domain-containing protein REM19-like isoform X2 | ||||
TrEMBL | A0A1S4DDC8 | 1e-149 | A0A1S4DDC8_TOBAC; B3 domain-containing protein At3g06220-like isoform X1 | ||||
TrEMBL | A0A1S4DDR3 | 1e-150 | A0A1S4DDR3_TOBAC; B3 domain-containing protein REM19-like isoform X2 | ||||
STRING | XP_009613984.1 | 2e-83 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G16640.1 | 5e-12 | B3 family protein |