PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016511348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 254aa MW: 28827.8 Da PI: 5.3778 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.1 | 9.2e-20 | 23 | 105 | 9 | 97 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +l++p f++ ++g+ + +l+d+ grsW+v + +k+++ +++ +GW +Fv++n+Lk g+f++F+++g+s+f +vk++ XP_016511348.1 23 PQICNPQLRIPPAFLKFFNGD--IPANSMLQDLAGRSWKVVV--EKNDNDFFFMGGWPDFVRDNNLKFGEFLTFSYVGNSNF--YVKIY 105 55567789*******988666..45568**************..**********************************9999..88886 PP | |||||||
2 | B3 | 43 | 8.1e-14 | 161 | 252 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++++ +++rl + f +++ + ++++ l++ + sW v + +s+r +l++G eF +n L+egD++ F+l+++++f l v+++ XP_016511348.1 161 VIKPSYIRKKRLNVQAAFGNRYlnR-GQGQNFEAALQT-DRGSWPVSV---HNSDRLILQTGFGEFIASNALREGDVCQFMLIDEEKFMLEVSIR 250 45677777788********999962.456889999887.6679*****...677899*************************************9 PP -S CS B3 98 rk 99 r+ XP_016511348.1 251 RQ 252 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-25 | 11 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-21 | 13 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.51E-19 | 15 | 105 | No hit | No description |
SMART | SM01019 | 1.9E-18 | 17 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-18 | 25 | 105 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.704 | 30 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.71E-9 | 156 | 251 | No hit | No description |
SuperFamily | SSF101936 | 3.14E-11 | 156 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-13 | 156 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.8E-5 | 158 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-11 | 161 | 252 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.445 | 201 | 253 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVTSIEQVTI PDHLPEFFKI YHPQICNPQL RIPPAFLKFF NGDIPANSML QDLAGRSWKV 60 VVEKNDNDFF FMGGWPDFVR DNNLKFGEFL TFSYVGNSNF YVKIYGINGS LKRDVTAIKE 120 PELHPLDEEI VQEIGTAAPP ADQALNGSGD LVVYAPSFDI VIKPSYIRKK RLNVQAAFGN 180 RYLNRGQGQN FEAALQTDRG SWPVSVHNSD RLILQTGFGE FIASNALREG DVCQFMLIDE 240 EKFMLEVSIR RQLK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 1e-13 | 16 | 108 | 10 | 102 | At1g16640 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016511348.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g06220-like isoform X1 | ||||
TrEMBL | A0A1S4DDC8 | 0.0 | A0A1S4DDC8_TOBAC; B3 domain-containing protein At3g06220-like isoform X1 | ||||
STRING | XP_009613984.1 | 1e-122 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12633 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 5e-19 | B3 family protein |