PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016511186.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 138aa MW: 15372.1 Da PI: 4.482 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.4e-05 | 2 | 25 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + XP_016511186.1 2 YSCTRCNkKSFSVLADLKSHLKHC 25 99*******************977 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.00019 | 33 | 49 | 5 | 21 |
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ XP_016511186.1 33 SCGTSFSRKDKLFGHMA 49 5**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 23 | 49 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MYSCTRCNKK SFSVLADLKS HLKHCGETKW KCSCGTSFSR KDKLFGHMAL FEGHMPAIEP 60 EEEAKPPAAA VEDDVEMDVS RGSDNGFLDI RTGSDNGFLD RLMLDGFESI DSYCFQDLLE 120 SSSPNGLNTV PDTNEWFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ261244 | 8e-48 | GQ261244.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI038 mRNA, complete cds. | |||
GenBank | HG975516 | 8e-48 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626824.1 | 5e-97 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Refseq | XP_016511186.1 | 1e-100 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q9C8N5 | 3e-27 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A1S4DCQ3 | 2e-98 | A0A1S4DCQ3_TOBAC; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
STRING | XP_009626824.1 | 2e-96 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10000 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 1e-24 | C2H2 family protein |