PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016511180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Whirly | ||||||||
Protein Properties | Length: 228aa MW: 25378.2 Da PI: 10.6571 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 201.4 | 1.1e-62 | 52 | 190 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 sv+k+kaal+ ++++ptf++ldsg +kl+r+G ++l++ ++++erkydWek+q falsatev++l+++++++sceffhdp++ +sn+G+vrk+l+ XP_016511180.1 52 SVFKGKAALSAEPRLPTFSKLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISIGTRDSCEFFHDPSMLSSNAGQVRKSLS 146 79********************************************************************************************* PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 +P +dGsG+fv+lsv n+ +k+n++f+vPv+ aefav+r++++ XP_016511180.1 147 FKPNADGSGYFVSLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFS 190 *****************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.3E-75 | 41 | 209 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 5.81E-65 | 45 | 226 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.3E-59 | 53 | 187 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAILKLIGLL RPRNQLLHKR LPGEGVRDSI WQHAINTLAA GKLTGRVFAP YSVFKGKAAL 60 SAEPRLPTFS KLDSGGVKLN RRGVIMLTFW PSVGERKYDW EKRQLFALSA TEVGSLISIG 120 TRDSCEFFHD PSMLSSNAGQ VRKSLSFKPN ADGSGYFVSL SVVNNNLKTN DRFTVPVTTA 180 EFAVMRTAFS FALPHIMGWD RFTNQPSESV SQSPSKVVPQ LMETEWDR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 1e-115 | 40 | 208 | 4 | 172 | StWhy2 |
3n1i_A | 1e-115 | 40 | 208 | 4 | 172 | protein StWhy2 |
3n1j_A | 1e-115 | 40 | 208 | 4 | 172 | Protein StWhy2 |
3n1k_A | 1e-115 | 40 | 208 | 4 | 172 | protein StWhy2 |
3n1l_A | 1e-115 | 40 | 208 | 4 | 172 | protein StWhy2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM234504 | 0.0 | HM234504.1 Solanum tuberosum Why2 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016511180.1 | 1e-169 | PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X6 | ||||
Swissprot | D9J034 | 1e-149 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A1S4DCL1 | 1e-167 | A0A1S4DCL1_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X6 | ||||
STRING | XP_009772771.1 | 1e-165 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 3e-91 | WHIRLY 2 |