PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016510881.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 27141 Da PI: 6.2718 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123 | 1.5e-38 | 39 | 140 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++ap++ ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq+++l+ael XP_016510881.1 39 PCGACKFLRRKCISGCIFAPHYGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTITYEAQARLSDPVYGCVSTILALQQQVASLQAEL 133 7***********************9989******************************************************************* PP DUF260 95 allkeel 101 a+++++l XP_016510881.1 134 AVVQTQL 140 **99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.555 | 38 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.2E-38 | 39 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDEPSSDGTS ENRRKGPGKR ATGAVEPLAS ITLLTSTAPC GACKFLRRKC ISGCIFAPHY 60 GSDQGAARFA AVHKVFGASN VSKLLLHIPA NRRHDAVVTI TYEAQARLSD PVYGCVSTIL 120 ALQQQVASLQ AELAVVQTQL INNRYAMENA LQTSQQQHHL QQQQLHQEHN IAILQPTYSN 180 NSSVSNNNLI NNINSANTFN STAFDQLPDD TCATNVPNNS PSFDPIHQED EEDEESHNSI 240 AFTNQMFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-38 | 29 | 146 | 1 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-38 | 29 | 146 | 1 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 4e-85 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 4e-85 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016510881.1 | 0.0 | PREDICTED: LOB domain-containing protein 20-like | ||||
Swissprot | Q9SRV3 | 1e-73 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A1S4DBV1 | 0.0 | A0A1S4DBV1_TOBAC; LOB domain-containing protein 20-like | ||||
STRING | XP_009616196.1 | 1e-142 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 4e-60 | LOB domain-containing protein 20 |