PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016510869.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 432aa    MW: 48228.4 Da    PI: 8.2504
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016510869.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.25e-3187192199
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                     f+kv tpsdv+k++rlv+pk++ae++     +++ +++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  
  XP_016510869.1  87 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsSSNDKGGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGaGElV 181
                     89****************************955666889*************************************************6657777 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++ ++r+
  XP_016510869.1 182 KHRLFIDWRRR 192
                     88888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-4179194IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-3184191IPR015300DNA-binding pseudobarrel domain
CDDcd100175.38E-2685175No hitNo description
PfamPF023621.0E-2887192IPR003340B3 DNA binding domain
SMARTSM010191.8E-2287193IPR003340B3 DNA binding domain
PROSITE profilePS5086314.05787188IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MNFFTSRRGI QQQTGSSKGM CPFSQSSSSS STSSSYHNQQ QQQQQQHRES TELMLMDSSP  60
TATRNHGDGD EIAGGEAHHL IEREHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSSN  120
DKGGLLLNFE DRNGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI VSFQRGAGEL  180
VKHRLFIDWR RRPDAPDMNP YMVPHHFSNW NHGRLFLQPF QRGQPVPSFT QQHPHSQYSH  240
NLLLEARSNI AQQQSHNYPH SYVYGIGNTS PAYYNTCFNN SSISTNATVV NANPCAGGSG  300
NYVRSGATAS QLLSQHELEI MQMQRGCSSV GGSSGVEPMV FNSVPVVQGK VAAKRLRLFG  360
VNMDCPMDHS DLFSSSTIPT TYSHAPHFSS SSSTSTTPLV QLRNFNSQLE AVPSDEESSD  420
KGKASMSLDL DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-62801931114B3 domain-containing transcription factor NGA1
5os9_B4e-62801931114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6686480.0KF668648.1 Nicotiana benthamiana NGATHAb mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510869.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
TrEMBLA0A1S4DCD00.0A0A1S4DCD0_TOBAC; B3 domain-containing transcription factor NGA1-like
STRINGXP_009803160.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-66B3 family protein