PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016510731.1 | ||||||||
Common Name | NtabSPL6-7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 434aa MW: 49583.6 Da PI: 7.7566 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.9 | 2.1e-41 | 126 | 201 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvC+ hsk ++v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q XP_016510731.1 126 CQVYGCNKDLSSSKDYHKRHKVCDEHSKFAKVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 201 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.9E-34 | 120 | 187 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.394 | 123 | 200 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.28E-39 | 124 | 205 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.1E-32 | 126 | 199 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MLSTSVITLD PILGEVELEE RFNHMAKRSN DPISLPIGLK LEQSIEHGEV RSSQSSNGIS 60 VLPTEKDYSH SPICQVRDHR KEETIVYREV KSNSSLMENS ALSSLEPLLL GKRSRTTNVH 120 SQVPLCQVYG CNKDLSSSKD YHKRHKVCDE HSKFAKVIVN GIEQRFCQQC SRFHLLAEFD 180 EGKRSCRKRL AGHNERRRKP QFDTHWDSRL LDMTSQRRAP FLFPEIRLGS SFCQERFEDH 240 SKHIKMEEKP ICISQLAMAV TKKQSPSKSL QHHHGTRKEN SSKIHLGATL SVEELSSGQN 300 SACALSLLSA HSQHHLHNLE NYCAHLKRDH NPEDFCELSA SRSFSSNELY SCEVIGTDRI 360 VQVLDDSQAV STDDLRERRV RRSYSMNSKN DLSPEDGPTV DLVQLSSHLQ RVEQLKHSDQ 420 AKQENDIFRC FTTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 121 | 199 | 6 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC073295 | 0.0 | LC073295.1 Nicotiana tabacum NtabSPL6-7 mRNA for squamosa promoter binding protein NtabSPL6-7, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313122.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_016510730.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 | ||||
Refseq | XP_016510731.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 isoform X2 | ||||
TrEMBL | A0A125SZN4 | 0.0 | A0A125SZN4_TOBAC; Squamosa promoter binding protein NtabSPL6-7 | ||||
TrEMBL | A0A1S4DBE6 | 0.0 | A0A1S4DBE6_TOBAC; squamosa promoter-binding-like protein 6 isoform X2 | ||||
STRING | XP_009600444.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-47 | SBP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 107827998 |
Publications ? help Back to Top | |||
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