PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016510654.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 758aa    MW: 83240.7 Da    PI: 5.7735
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016510654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665e-2190145156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R+++k
  XP_016510654.1  90 RKRYHRHTQHQIQELEAYFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMK 145
                     789999***********************************************999 PP
2START208.62.4e-652784981206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++e++++a  +ep+W+ s     + +n++e+ ++f+++ +     +++ea+r+++vv+m++++lve+l+d++  W+ ++     +a+t+
  XP_016510654.1 278 ELAVAAMEEFIQMAHMQEPLWFPSIengtSLLNEEEYFRIFPRGIGpkpdgFKTEASRETAVVIMNHVNLVEILMDVN-HWSSMFSgvvsRASTI 371
                     57899********************999999************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +v+s+g      galq++ ae+q++sp vp R+ +f+Ry++   +g+w++vdvS+d+ +  p    ++R++++pSg+li++++ng+skvtwveh+
  XP_016510654.1 372 DVLSTGvagnftGALQVILAEFQVPSPQVPtRECYFARYCKHRVDGTWAVVDVSLDHLRAIP----SARCRRRPSGCLIQEMPNGYSKVTWVEHI 462
                     ************************************************************99....5**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++ +h+++++lv+sgla+gak+w+atl+rqce+
  XP_016510654.1 463 EVDDSAVHNIYKPLVSSGLAFGAKRWTATLDRQCER 498
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2269145IPR009057Homeodomain-like
SuperFamilySSF466896.27E-2078148IPR009057Homeodomain-like
PROSITE profilePS5007117.32987147IPR001356Homeobox domain
SMARTSM003892.0E-2088151IPR001356Homeobox domain
CDDcd000867.82E-2089148No hitNo description
PfamPF000461.4E-1890145IPR001356Homeobox domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PROSITE profilePS5084842.54269501IPR002913START domain
SuperFamilySSF559611.32E-33270500No hitNo description
CDDcd088755.47E-123273497No hitNo description
SMARTSM002345.1E-62278498IPR002913START domain
PfamPF018521.1E-54279498IPR002913START domain
Gene3DG3DSA:3.30.530.204.2E-6374486IPR023393START-like domain
SuperFamilySSF559611.01E-25521748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MPSRISRRSN KMSSLVVNDG IDIGFSSSGL PLGQSSSMLD SQLHSLDMLS NTSESEMPRL  60
SSEDFGSKSG NEGNSAGDEQ DVNNKSLNKR KRYHRHTQHQ IQELEAYFKE CPHPDDKQRK  120
ELSRELGLEP LQIKFWFQNK RTQMKTKNER GENSHLRAEN EKLRAENLRF REALGNVSCP  180
NCGGQQPPIG EMSYDEHQLR LENTRLREEI ERISTIASKY VGKPFSNHNN GYSPPLDLGV  240
PAFSTPQSVN GDAYGDGEDV IISSIIGPSD AEKPFIIELA VAAMEEFIQM AHMQEPLWFP  300
SIENGTSLLN EEEYFRIFPR GIGPKPDGFK TEASRETAVV IMNHVNLVEI LMDVNHWSSM  360
FSGVVSRAST IDVLSTGVAG NFTGALQVIL AEFQVPSPQV PTRECYFARY CKHRVDGTWA  420
VVDVSLDHLR AIPSARCRRR PSGCLIQEMP NGYSKVTWVE HIEVDDSAVH NIYKPLVSSG  480
LAFGAKRWTA TLDRQCERLA SAMATNFPTN DLSNMVLTNQ DSRKSMLKLA ERMVNSFCSG  540
MSATAGNQWS TLSGSGSDDN VRVMTRKSVD DPGRPPGIVL SAATSFWLPI SPKRVFDFLR  600
DENTRSEWDI LSNGGVVQEM AHIANGRETG NCVSLLRVNS SNSSQSNMLI LQESSTDPTN  660
SYVIYAPVDI GAMNIVLGGG DPDFVALLPS GFAILPDGPP GNSRVGSGGS LLTVAFQILV  720
DSIPTAKLSL GSVATVNNLI ACTVDRIKAA LLSESTPS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510654.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A1S4DBR40.0A0A1S4DBR4_TOBAC; homeobox-leucine zipper protein HDG2-like
STRINGXP_009611623.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2