PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016509845.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 190aa MW: 22413.8 Da PI: 4.7767

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016509845.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.00011	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H XP_016509845.1 35 YECNFCKRGFTNAQALGGHMNIH 57 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.4E-5	33	61	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.96E-7	33	62	No hit	No description
PROSITE profile	PS50157	11.261	35	62	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MASEKNNNYS DSSSEDNDRE SEKFNDDNTG IGRSYECNFC KRGFTNAQAL GGHMNIHRKD 60 KLKAKQNSNQ ESSSIYSRKS QDQANAFDSS RYYAPISSHE QHHYYSRAQM NYQFYYQHPN 120 PSYQHVHDSR PMQENYNYFG MHDNYYDTNL SLRIEPTLID DEEEEEEGKK DVDVDENELD 180 LELRLGYNNH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009781958.1	1e-139	PREDICTED: transcriptional regulator TAC1-like
Refseq	XP_016509845.1	1e-139	PREDICTED: transcriptional regulator TAC1-like
TrEMBL	A0A1S4D8Q5	1e-138	A0A1S4D8Q5_TOBAC; transcriptional regulator TAC1-like
TrEMBL	A0A1U7WTN1	1e-138	A0A1U7WTN1_NICSY; transcriptional regulator TAC1-like
STRING	XP_009781958.1	1e-139	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2136	21	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	7e-15	C2H2 family protein