PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 494aa MW: 54461 Da PI: 8.2809

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016509383.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.6	6.3e-42	173	249	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+gC++dls+ k+y++rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q+ XP_016509383.1 173 CQVQGCSKDLSSSKDYNKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQT 249 **************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-33	168	234	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.334	170	247	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.15E-39	171	250	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.0E-32	173	246	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MYCRKKTSQF LKQKMESWSF FSVGKGFVSE DSVSLDDRII REKHCVTSWE LNNPSSFGST 60 VGIENQEFPK LGTPNNQIRD VLSNKISGGG VFSSVTVPQI VFSGASESSS KMSRSVVESN 120 CRDSSLVDLK LGSFPGQQHV QSFKSPKIMT NLSSNVPDKR MRSGGLKYQT PYCQVQGCSK 180 DLSSSKDYNK RHKVCEVHSK TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH 240 NERRRKPQTG STGRFQGTSF AMSSSLCQNI LGSSILYQPK YEMEDWYKNV KVEDAADYNP 300 RLTMPFTNGH SQSKSLCTSY HAEKQCPPFH DEEITAPTRS KIDESSKSYL HDIEGSDFVT 360 RPLVQSFSIG GDVLHVLDSI STIQGISGIS NSGCAPSLLS SQSQDSSNQS SLIPTASHLI 420 TPSSNAHYNV THISEKPLGV SPQALSSRVP DTFNSAGVNS GESCLEQILV SNSSNNCFIN 480 DPMIDLLQLS SQIQ

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MYCRKKTSQF LKQKMESWSF FSVGKGFVSE DSVSLDDRII REKHCVTSWE LNNPSSFGST  60
VGIENQEFPK LGTPNNQIRD VLSNKISGGG VFSSVTVPQI VFSGASESSS KMSRSVVESN  120
CRDSSLVDLK LGSFPGQQHV QSFKSPKIMT NLSSNVPDKR MRSGGLKYQT PYCQVQGCSK  180
DLSSSKDYNK RHKVCEVHSK TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH  240
NERRRKPQTG STGRFQGTSF AMSSSLCQNI LGSSILYQPK YEMEDWYKNV KVEDAADYNP  300
RLTMPFTNGH SQSKSLCTSY HAEKQCPPFH DEEITAPTRS KIDESSKSYL HDIEGSDFVT  360
RPLVQSFSIG GDVLHVLDSI STIQGISGIS NSGCAPSLLS SQSQDSSNQS SLIPTASHLI  420
TPSSNAHYNV THISEKPLGV SPQALSSRVP DTFNSAGVNS GESCLEQILV SNSSNNCFIN  480
DPMIDLLQLS SQIQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-29	173	246	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LC073303	0.0	LC073303.1 Nicotiana tabacum NtabSPL6-2 mRNA for squamosa promoter binding protein NtabSPL6-2, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777325.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
Refseq	XP_009777331.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
TrEMBL	A0A1S4D7R5	0.0	A0A1S4D7R5_TOBAC; squamosa promoter-binding-like protein 6
TrEMBL	A0A1U7WJ85	0.0	A0A1U7WJ85_NICSY; squamosa promoter-binding-like protein 6 isoform X1
STRING	XP_009777325.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5187	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	3e-45	SBP family protein

Publications ? help Back to Top
Han YY,Ma YQ,Li DZ,Yao JW,Xu ZQ Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95. Dev. Genes Evol., 2016. 226(1): p. 1-14 [PMID:26635304]