PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016509243.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 497aa MW: 53413.1 Da PI: 8.1808

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016509243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_016509243.1 55 FVCEICNKGFQRDQNLQLHRRGH 77 89*******************88 PP
2	zf-C2H2	16.7	2e-05	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_016509243.1 131 FKCERCTKKYAVQSDWKAHMKTC 153 89*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.02E-7	54	77	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	54	77	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	55	77	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	55	77	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.9E-5	55	77	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	96	126	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.5E-5	119	152	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.02E-7	126	152	No hit	No description
SMART	SM00355	63	131	151	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MAEMENSSSM TVAGSSLEET ITQQNFPVKK KRNLPDPEAE VIALSPKTLM ATNRFVCEIC 60 NKGFQRDQNL QLHRRGHNLP WKLRQRTSKE VKKRVYVCPE AMCVHHDPSR ALGDLTGIKK 120 HFCRKHGEKK FKCERCTKKY AVQSDWKAHM KTCGTREYRC DCGTLFSRRD SFITHRAFCD 180 ALAQESARAQ PMGITNTEEN LKVDEAVTSS SSPPPQPLTP STGVLSPVLS IQSSELPADN 240 QNQAGVQLQA AQGTTPVSTT TVTATTISTT ASITGPGSSK VFASVFPPST TLAGHPHSSY 300 SDILCAIGPE QISPIEPMSL SLSSSFYLSA NDGSTLFQDH TGHSQHYGST TQPVLSATAL 360 LQKAAQMGAT SSNNSFLRGL GLAMSSTSAS DNISRVKLEN NVELPGLGIQ LPSNGPSGRW 420 TDLMMGPSHE SMMFGNKPPT LDFLGLGNDA NATSSNGFSA LLSSMDGGFG VATTSYGGVA 480 TRGEAWDGHS DRKPSML

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MAEMENSSSM TVAGSSLEET ITQQNFPVKK KRNLPDPEAE VIALSPKTLM ATNRFVCEIC  60
NKGFQRDQNL QLHRRGHNLP WKLRQRTSKE VKKRVYVCPE AMCVHHDPSR ALGDLTGIKK  120
HFCRKHGEKK FKCERCTKKY AVQSDWKAHM KTCGTREYRC DCGTLFSRRD SFITHRAFCD  180
ALAQESARAQ PMGITNTEEN LKVDEAVTSS SSPPPQPLTP STGVLSPVLS IQSSELPADN  240
QNQAGVQLQA AQGTTPVSTT TVTATTISTT ASITGPGSSK VFASVFPPST TLAGHPHSSY  300
SDILCAIGPE QISPIEPMSL SLSSSFYLSA NDGSTLFQDH TGHSQHYGST TQPVLSATAL  360
LQKAAQMGAT SSNNSFLRGL GLAMSSTSAS DNISRVKLEN NVELPGLGIQ LPSNGPSGRW  420
TDLMMGPSHE SMMFGNKPPT LDFLGLGNDA NATSSNGFSA LLSSMDGGFG VATTSYGGVA  480
TRGEAWDGHS DRKPSML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	127	196	3	72	Zinc finger protein JACKDAW
5b3h_F	3e-34	127	196	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016509243.1	0.0	PREDICTED: protein indeterminate-domain 2-like isoform X2
Swissprot	Q9LVQ7	1e-130	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A1S4D7C5	0.0	A0A1S4D7C5_TOBAC; protein indeterminate-domain 2-like isoform X2
STRING	XP_009612196.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-110	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]