PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016509201.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 814aa MW: 92724.2 Da PI: 8.3852 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.8 | 4.9e-25 | 107 | 213 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkwev 78 +fY+eYAk++GF +++s++s+ +g +++++fvCs++g+++e +++ ++k r +r+ ++t+Cka+l+vk+++dg+w + XP_016509201.1 107 SFYKEYAKSIGFFSIIKASRRSRISGIFIDAKFVCSRYGSKQEPSTSvtepvpsadgagsipvrRKKGRINRSWSKTDCKACLHVKRRSDGRWII 201 5******************************************9999***************99999999************************* PP FAR1 79 tkleleHnHela 90 ++++eHnHe + XP_016509201.1 202 RTFVKEHNHETF 213 *********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-22 | 107 | 213 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.9E-29 | 331 | 425 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.423 | 611 | 647 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.7E-8 | 612 | 646 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.8E-6 | 622 | 649 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 814 aa Download sequence Send to blast |
MNGRVSGTRL TTWIGGTHLT SMVIDLEHPS GDQHKEKEDC GHHICGATAT ASKSVCLDRG 60 NAGPSWNEGT SNGTYILPNA DSLAVNCYRG LEPHDGMEFD SKEDAFSFYK EYAKSIGFFS 120 IIKASRRSRI SGIFIDAKFV CSRYGSKQEP STSVTEPVPS ADGAGSIPVR RKKGRINRSW 180 SKTDCKACLH VKRRSDGRWI IRTFVKEHNH ETFPDRTNYL RGHRNTDLGK NGADAFHSIC 240 GRTKKTYVTM SRQSGVMKKV EKQKNVGTKS SPQSLALDEG DAQVMLEHFL YMQDENPNFF 300 YAMDLNQEQR LRNVFWVDAK GRIDYSNFSD VVLVDTTYIK NDYKLRFVPF IGVNHHCQSI 360 LLGCGLIANE SKSTFVWLMR AWLRAMGGQA PKVILTDQDN TLEEVIAEVL PDCCHCFCLW 420 HVLSNIQEKL GHVIRQHEDF LSKFNKCILR SATNELFEKR WWKVVDRFDL RNDLWIKSLY 480 KDRLRWVPTF MNNIFLAGMS TMQRSESVSS LLEKCMLCRT TLKEFLDQYK KLLREKCQEE 540 ASADSETRHK QPGLKSPSPF EKQMSTLYTH TIFKKFQAQV LGVVACHPKK ESDDGAAATY 600 RVQDFEENQE FVVVWSEKTS DASCSCHLFE YNGFLCRHVM IVLQMAGVHN IPSKYILSRW 660 TKGAKSREKM REVNLVDSRV QRYNDLCQRA FELGDEGSLS QESYNIVFNA LENFLRRCEA 720 VNDPNLNESE PCFPTNQVFI DGNNPSKSNG KNIARKEKGQ SGLGEPTVDY PFQSHSAMQP 780 MGQINARFPA PGGYYSSPQI IQGVPVFAFW CRDN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016509201.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X5 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A1S4D767 | 0.0 | A0A1S4D767_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X5 | ||||
STRING | XP_009772328.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |