PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016509006.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 703aa MW: 79343.5 Da PI: 5.5235

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016509006.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	353.8	2.6e-108	325	699	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL++cAea +s + + ++L+++++++sp gdp+ Rla +f++AL+ar a+ + ++++++ ++s + ++ l+a++++ ++P+ ++s++ XP_016509006.1 325 TSLLTRCAEAAASYNSKTFVEVLSKIRQHSSPFGDPTARLAYCFANALEARFAG--GGGVDTITTPKKSILSAADFLKAYQVYITACPFKRMSNI 417 689************************************************9..55556666666666789****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN+ I + ++++ +vHiiDf+i +G+QWp++++ ++ Rp+gpp+l+iTg++ p++g +e++eetg+rL+++++++gvpfe+++ +ak+++d+ XP_016509006.1 418 FANKSIAKLTSEAPKVHIIDFGILYGFQWPCIIHGISLRPGGPPKLKITGIDFPQPGfrPAERVEETGRRLENYCKRFGVPFEYKA-IAKKWDDI 511 ****************************************************9*************************.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 +le+L+++++E+++Vn+ ++l++++de+v ++ +r++vL+l+k+++P+ +v+ +a +n++ F +rf eal ++s+ fd++ea++ re+e XP_016509006.1 512 KLEHLNIEQDETVVVNCLYRLKNVPDETVLTNGnnnPRNAVLRLIKEINPHWFVHGIVNAMYNASFFTTRFREALFHFSSQFDMFEATMTREDEG 606 ***********************9977655669****************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+ E+e++gr+i+nv+aceg+er+er e++++W+ r + aGF+++pl+++++k++k+ +r+++ + + v+e+s+++++gWk+r ++++S+W+ XP_016509006.1 607 RMIFEQEVFGRDIMNVIACEGTERVERPESYKQWSVRNQIAGFRQLPLNQDIVKEVKAKVRMFYHRDFLVDEDSNWMLQGWKGRIMYALSVWQ 699 ************************************************************999***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.464	298	679	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.2E-106	325	699	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MNTNTYFPSV DHRSTDGLEC CHRFAMASTN LGNEFSSTDI HDVVFFSSSN GTSSNNDEVV 60 VEGGGGGGCD QTVVESDYFD GVFKYIQQML LEEEDDLESR PCMFQDCIAL QAAEKSFYDA 120 LTDNNNNDDD PTIVEHCSST DFPVNHGFIS TTHCLQDDNF NHFLDQSDLI SDFDCSNTGI 180 RGNTPLNNNC QVVAAANDDH RNIYYGVNST NTNNQGGTSK SEGKKKHNRE DCGESSNGPN 240 SKQFASNGAE ETEEKTHEEY YDKAVLCPDM NPAFYVEDSC DDGSRSSSEN AAWDKQKSRH 300 IKQSKRGRPR GTKKGVKTNE VVDLTSLLTR CAEAAASYNS KTFVEVLSKI RQHSSPFGDP 360 TARLAYCFAN ALEARFAGGG GVDTITTPKK SILSAADFLK AYQVYITACP FKRMSNIFAN 420 KSIAKLTSEA PKVHIIDFGI LYGFQWPCII HGISLRPGGP PKLKITGIDF PQPGFRPAER 480 VEETGRRLEN YCKRFGVPFE YKAIAKKWDD IKLEHLNIEQ DETVVVNCLY RLKNVPDETV 540 LTNGNNNPRN AVLRLIKEIN PHWFVHGIVN AMYNASFFTT RFREALFHFS SQFDMFEATM 600 TREDEGRMIF EQEVFGRDIM NVIACEGTER VERPESYKQW SVRNQIAGFR QLPLNQDIVK 660 EVKAKVRMFY HRDFLVDEDS NWMLQGWKGR IMYALSVWQP IHK

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MNTNTYFPSV DHRSTDGLEC CHRFAMASTN LGNEFSSTDI HDVVFFSSSN GTSSNNDEVV  60
VEGGGGGGCD QTVVESDYFD GVFKYIQQML LEEEDDLESR PCMFQDCIAL QAAEKSFYDA  120
LTDNNNNDDD PTIVEHCSST DFPVNHGFIS TTHCLQDDNF NHFLDQSDLI SDFDCSNTGI  180
RGNTPLNNNC QVVAAANDDH RNIYYGVNST NTNNQGGTSK SEGKKKHNRE DCGESSNGPN  240
SKQFASNGAE ETEEKTHEEY YDKAVLCPDM NPAFYVEDSC DDGSRSSSEN AAWDKQKSRH  300
IKQSKRGRPR GTKKGVKTNE VVDLTSLLTR CAEAAASYNS KTFVEVLSKI RQHSSPFGDP  360
TARLAYCFAN ALEARFAGGG GVDTITTPKK SILSAADFLK AYQVYITACP FKRMSNIFAN  420
KSIAKLTSEA PKVHIIDFGI LYGFQWPCII HGISLRPGGP PKLKITGIDF PQPGFRPAER  480
VEETGRRLEN YCKRFGVPFE YKAIAKKWDD IKLEHLNIEQ DETVVVNCLY RLKNVPDETV  540
LTNGNNNPRN AVLRLIKEIN PHWFVHGIVN AMYNASFFTT RFREALFHFS SQFDMFEATM  600
TREDEGRMIF EQEVFGRDIM NVIACEGTER VERPESYKQW SVRNQIAGFR QLPLNQDIVK  660
EVKAKVRMFY HRDFLVDEDS NWMLQGWKGR IMYALSVWQP IHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-48	324	699	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016509006.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A1S4D6M8	0.0	A0A1S4D6M8_TOBAC; scarecrow-like protein 30
STRING	XP_009798121.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-154	GRAS family protein