PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016508956.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 144aa    MW: 16114.5 Da    PI: 8.7057
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016508956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.22.1e-181159149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i  ++ r vtfskRr+g++KKA EL  +++a+va i+fs+tgk y+y
  XP_016508956.1 11 KQIMKETSRMVTFSKRRKGLFKKALELESMTGARVAAIVFSPTGKPYTY 59
                    5788899*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-23362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.586363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-21462IPR002100Transcription factor, MADS-box
CDDcd001205.09E-25460No hitNo description
PRINTSPR004042.6E-16525IPR002100Transcription factor, MADS-box
PfamPF003199.1E-221359IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-162540IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-164061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MGTGKKKIEI KQIMKETSRM VTFSKRRKGL FKKALELESM TGARVAAIVF SPTGKPYTYG  60
DVYSAIDRHF SSSIDPLSGS GDVCISGSRS TPPSRNGLRN WLENIDVQEC ENLNELLLLK  120
EQLEGTREKL AFIEDSESFL ALFM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508956.11e-103PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1S4D6G01e-101A0A1S4D6G0_TOBAC; agamous-like MADS-box protein AGL29
STRINGXP_009603478.11e-101(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.11e-14M-type_MADS family protein