PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016508949.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 119aa MW: 13084.9 Da PI: 7.1896

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016508949.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.7	1.3e-12	2	39	11	48
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 vtfskRr+g++KK L +++a+va i+fs+tgk y+ XP_016508949.1 2 VTFSKRRKGLFKKTLQLESMTGARVAAIVFSPTGKPYT 39 9*********************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00319	8.4E-16	1	39	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.129	1	44	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.95E-14	2	39	No hit	No description
SMART	SM00432	2.3E-4	2	43	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-12	2	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-5	6	21	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-5	21	42	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MVTFSKRRKG LFKKTLQLES MTGARVAAIV FSPTGKPYTC GDVSSAIDRH FSSSIDPLSG 60 SGDVCISGSR STTSRNGLRN WLENIDVEEL LLLKEQLEGT REKLACMEDS ESFLALFMS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009617106.1	5e-83	PREDICTED: MADS-box transcription factor 23-like
TrEMBL	A0A1S4D6M9	2e-81	A0A1S4D6M9_TOBAC; agamous-like MADS-box protein AGL29
STRING	XP_009617106.1	2e-82	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2337	17	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17310.1	1e-12	M-type_MADS family protein