PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016508619.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 327aa    MW: 36980.9 Da    PI: 8.3204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016508619.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09180227455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_016508619.1 180 SHSLAERARREKISKKMKCLQDLVPGC----NKVIGKAGMLDEIINYVQSLQ 227
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.49E-6174231No hitNo description
SuperFamilySSF474598.9E-16174240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.958176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17176245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6180227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MLGCEEMRIL ERQRAIFERL YQCHQQLSSL PNQNLAQLNS LISEHKMDCN QVQNFPSKID  60
PQMDGNSPSL NMFGSEQKNW AGSNFTNNSL ELARQSLSTL SNSSITRTST KKRKTEQFYE  120
EDDCKARKLE GEAGKVKSEI TVKSEKENSG NNSKENSKIS EVKKLDYIHV RARRGQATDS  180
HSLAERARRE KISKKMKCLQ DLVPGCNKVI GKAGMLDEII NYVQSLQKQV EFLSMKLAAS  240
NLNTDNLVAK EFPSQMANFA NPACLQNNLF QQQQGSSIGV ATMLPQRRED CLMSFPEAFL  300
DSSHVPAVQQ LPNFENDLQC LFGIRFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754422e-62HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508619.10.0PREDICTED: transcription factor BEE 2-like isoform X1
TrEMBLA0A1S4D5R50.0A0A1S4D5R5_TOBAC; transcription factor BEE 2-like isoform X1
STRINGXP_009803326.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.16e-45BR enhanced expression 2