PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016508619.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 327aa MW: 36980.9 Da PI: 8.3204

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016508619.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.4e-09	180	227	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_016508619.1 180 SHSLAERARREKISKKMKCLQDLVPGC----NKVIGKAGMLDEIINYVQSLQ 227 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.49E-6	174	231	No hit	No description
SuperFamily	SSF47459	8.9E-16	174	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.958	176	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-17	176	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	180	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	182	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MLGCEEMRIL ERQRAIFERL YQCHQQLSSL PNQNLAQLNS LISEHKMDCN QVQNFPSKID 60 PQMDGNSPSL NMFGSEQKNW AGSNFTNNSL ELARQSLSTL SNSSITRTST KKRKTEQFYE 120 EDDCKARKLE GEAGKVKSEI TVKSEKENSG NNSKENSKIS EVKKLDYIHV RARRGQATDS 180 HSLAERARRE KISKKMKCLQ DLVPGCNKVI GKAGMLDEII NYVQSLQKQV EFLSMKLAAS 240 NLNTDNLVAK EFPSQMANFA NPACLQNNLF QQQQGSSIGV ATMLPQRRED CLMSFPEAFL 300 DSSHVPAVQQ LPNFENDLQC LFGIRFQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	2e-62	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016508619.1	0.0	PREDICTED: transcription factor BEE 2-like isoform X1
TrEMBL	A0A1S4D5R5	0.0	A0A1S4D5R5_TOBAC; transcription factor BEE 2-like isoform X1
STRING	XP_009803326.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4000	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36540.1	6e-45	BR enhanced expression 2