PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016508484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 864aa MW: 98348.9 Da PI: 6.2197 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 23.6 | 1.7e-07 | 100 | 130 | 60 | 90 |
FAR1 60 tgCkaklkvkkekdgkwevtkleleHnHela 90 +C+a+l+v+++ ++kw+vtk +eH+H+l+ XP_016508484.1 100 ESCDAMLRVELKGQNKWVVTKYMKEHSHSLV 130 68***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-5 | 99 | 130 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.7E-26 | 268 | 359 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 2.3E-9 | 546 | 580 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 11.189 | 546 | 582 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.8E-6 | 557 | 584 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 864 aa Download sequence Send to blast |
MDVEVIDVEE GNMQHQGGIT DDGDDEPSES GEANVNGRSN APERDEVVEP QTGMVFHSED 60 QAKNFYDEYA RHLGFTTHVY QFNRLKTDFL CNGLRTVYGE SCDAMLRVEL KGQNKWVVTK 120 YMKEHSHSLV HPNKVHYHTS HRHFAVAKKN GPENNQGVGI VPSGVMYVSV DGNRIPVEIN 180 RGAKSTRLAE SDQTVKDTVP QSFSPRQCNQ RRTLGRDAQN LLDYFKKMQA ENPGFYYAIQ 240 LDEDNRMANV FWADARSRNA YSHFGDAVIL DTMYRVNQCR VPFAPFTGVN HHGQTILFGC 300 ALLLDESEAT FVWLFKTFLA AMNDRAPVSI ITDLDTVIQS AVAQVFPGTR HCINKWHVLR 360 GGQDRMAHVC HMYPNFQVEL YNCINLTETV EEFESYWETI LEKYDLKKND WLQSIYNTRR 420 QWVPAYFRDT FFAALSPNQE YECSFFDGYV NQQITLPLFF RQYERALENS FEKEIEADFD 480 TICTTPPLRT PSPMEKQAAT LYTKKIFLKF QEELVETFVY TANRIDGDGA LSTFRVAKFE 540 DDQKAYIVSL NISELKANCS CQMFECSGIL CRHILTVFTV TNVLTLPSHY ILKRWTINAK 600 CRAESDEHVQ LHGTESMAHK YNSLCREAIR YAEEGAVVQE TYNAALAALK EGGKKVALAK 660 RNVANPPSSQ VSGVGYDDRR TSASAPEMTP LLWPRQDEMT KRFNLNDTGI PARTIADLNA 720 QRMAPVSLHR DDGHADNTVI LPCLKSMTWV MENKTSTPAN RVAVINLKLQ DYNRTPSRES 780 EVKFQLSRVT LEPMLKSMAY ISEQLSTPAN RVAVINLKLQ DTETTSGESE VKFQVSRDTL 840 AAMLRSMAYI REQLSNTFSP VPLE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609280.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X2 | ||||
Refseq | XP_016508484.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X3 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A1S4D5D5 | 0.0 | A0A1S4D5D5_TOBAC; protein FAR1-RELATED SEQUENCE 3-like isoform X3 | ||||
STRING | XP_009609279.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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