PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016508482.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 873aa MW: 99466.5 Da PI: 6.3865

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016508482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.5	1.8e-07	100	130	60	90
FAR1 60 tgCkaklkvkkekdgkwevtkleleHnHela 90 +C+a+l+v+++ ++kw+vtk +eH+H+l+ XP_016508482.1 100 ESCDAMLRVELKGQNKWVVTKYMKEHSHSLV 130 68***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-5	99	130	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-26	268	359	IPR018289	MULE transposase domain
Pfam	PF04434	2.3E-9	546	580	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.189	546	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-6	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence Send to blast
MDVEVIDVEE GNMQHQGGIT DDGDDEPSES GEANVNGRSN APERDEVVEP QTGMVFHSED 60 QAKNFYDEYA RHLGFTTHVY QFNRLKTDFL CNGLRTVYGE SCDAMLRVEL KGQNKWVVTK 120 YMKEHSHSLV HPNKVHYHTS HRHFAVAKKN GPENNQGVGI VPSGVMYVSV DGNRIPVEIN 180 RGAKSTRLAE SDQTVKDTVP QSFSPRQCNQ RRTLGRDAQN LLDYFKKMQA ENPGFYYAIQ 240 LDEDNRMANV FWADARSRNA YSHFGDAVIL DTMYRVNQCR VPFAPFTGVN HHGQTILFGC 300 ALLLDESEAT FVWLFKTFLA AMNDRAPVSI ITDLDTVIQS AVAQVFPGTR HCINKWHVLR 360 GGQDRMAHVC HMYPNFQVEL YNCINLTETV EEFESYWETI LEKYDLKKND WLQSIYNTRR 420 QWVPAYFRDT FFAALSPNQE YECSFFDGYV NQQITLPLFF RQYERALENS FEKEIEADFD 480 TICTTPPLRT PSPMEKQAAT LYTKKIFLKF QEELVETFVY TANRIDGDGA LSTFRVAKFE 540 DDQKAYIVSL NISELKANCS CQMFECSGIL CRHILTVFTV TNVLTLPSHY ILKRWTINAK 600 CRAESDEHVQ LHGTESMAHK YNSLCREAIR YAEEGAVVQE TYNAALAALK EGGKKVALAK 660 RNVANPPSSQ VSGVGYDDRR TSASAPEMTP LLWPRQDEMT KRFNLNDTGI PARTIADLNA 720 QRMAPVSLHR DDGHADNTVI LPCLKSMTWV MENKTSTPAN RVAVINLKLQ DYNRTPSRES 780 EVKFQLSRVT LEPMLKSMAY ISEQLSTPAN RVAVINLKLQ DTETTSGESE VKFQVSRDTL 840 AAMLRSMAYI REQLSNTLHG VTCMCIYMFK FVL

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence Send to blast

MDVEVIDVEE GNMQHQGGIT DDGDDEPSES GEANVNGRSN APERDEVVEP QTGMVFHSED  60
QAKNFYDEYA RHLGFTTHVY QFNRLKTDFL CNGLRTVYGE SCDAMLRVEL KGQNKWVVTK  120
YMKEHSHSLV HPNKVHYHTS HRHFAVAKKN GPENNQGVGI VPSGVMYVSV DGNRIPVEIN  180
RGAKSTRLAE SDQTVKDTVP QSFSPRQCNQ RRTLGRDAQN LLDYFKKMQA ENPGFYYAIQ  240
LDEDNRMANV FWADARSRNA YSHFGDAVIL DTMYRVNQCR VPFAPFTGVN HHGQTILFGC  300
ALLLDESEAT FVWLFKTFLA AMNDRAPVSI ITDLDTVIQS AVAQVFPGTR HCINKWHVLR  360
GGQDRMAHVC HMYPNFQVEL YNCINLTETV EEFESYWETI LEKYDLKKND WLQSIYNTRR  420
QWVPAYFRDT FFAALSPNQE YECSFFDGYV NQQITLPLFF RQYERALENS FEKEIEADFD  480
TICTTPPLRT PSPMEKQAAT LYTKKIFLKF QEELVETFVY TANRIDGDGA LSTFRVAKFE  540
DDQKAYIVSL NISELKANCS CQMFECSGIL CRHILTVFTV TNVLTLPSHY ILKRWTINAK  600
CRAESDEHVQ LHGTESMAHK YNSLCREAIR YAEEGAVVQE TYNAALAALK EGGKKVALAK  660
RNVANPPSSQ VSGVGYDDRR TSASAPEMTP LLWPRQDEMT KRFNLNDTGI PARTIADLNA  720
QRMAPVSLHR DDGHADNTVI LPCLKSMTWV MENKTSTPAN RVAVINLKLQ DYNRTPSRES  780
EVKFQLSRVT LEPMLKSMAY ISEQLSTPAN RVAVINLKLQ DTETTSGESE VKFQVSRDTL  840
AAMLRSMAYI REQLSNTLHG VTCMCIYMFK FVL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016508482.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1S4D4Z7	0.0	A0A1S4D4Z7_TOBAC; protein FAR1-RELATED SEQUENCE 3-like isoform X1
STRING	XP_009609279.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]