PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

XP_016507963.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 196aa MW: 21756.3 Da PI: 7.1475

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016507963.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135	2.7e-42	25	124	1	99
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC ++ C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el XP_016507963.1 25 PCAACKFLRRKCLPGnCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKEL 119 7*********8855***************************************************************************** PP DUF260 95 allke 99 +++++ XP_016507963.1 120 DATNA 124 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.086	24	126	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-41	25	123	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MNHSSSNHLH RTEIMASSSS YSNPPCAACK FLRRKCLPGN CIFAPYFPPE EPTKFANVHK 60 IFGASNVSKL LNEIQPHQRE DAVNSLAYEA EARMKDPVYG CVGAISVLQR QVIRLQKELD 120 ATNADLMRYI NPSGGIMNHQ QRSNLNYGRI TGPVDGTTTG FDQNYGFCIP NYSPNTWNNT 180 TISGNHNPEG DDDSSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-63	16	129	2	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-63	16	129	2	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766717.1	1e-148	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_009766723.1	1e-148	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_016507963.1	1e-148	PREDICTED: LOB domain-containing protein 25-like isoform X1
Swissprot	Q8L8Q3	5e-67	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1S4D3Q4	1e-146	A0A1S4D3Q4_TOBAC; LOB domain-containing protein 25-like isoform X1
TrEMBL	A0A1U7VF65	1e-146	A0A1U7VF65_NICSY; LOB domain-containing protein 25-like isoform X1
STRING	XP_009766717.1	1e-147	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-69	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]