PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507834.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 443aa    MW: 47891.3 Da    PI: 7.2698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20223272255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  XP_016507834.1 223 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 272
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.712223280IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22223281IPR016177DNA-binding domain
PfamPF008473.9E-14223272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-33223281IPR001471AP2/ERF domain
SMARTSM003805.1E-38223286IPR001471AP2/ERF domain
PRINTSPR003671.3E-11224235IPR001471AP2/ERF domain
CDDcd000182.83E-15231282No hitNo description
PRINTSPR003671.3E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MCLLKVANPR KSSEYVRFTD TSDSETTTTT AAEGGAQPYG QGDQFFEEMI QQQIHQEADY  60
LLSTSSAMPM FTGYSQTREM STMVTALTHV VSCQSYRPDI SGSVTSSFGG GGSGIYSANS  120
PSSAYSSSSS GSRAGQKRSR DQEESVTQIL EQSHHGVYGG FGEFRAGLPS SSVKAEATSM  180
VAPSNTTIST ITTVPAFTTT TTTTTTAAAG GSTEETGGER RRRYRGVRQR PWGKWAAEIR  240
DPHKAARVWL GTFDTAEAAA RAYDEAALRF RGNRAKLNFP ENVSRLLPQL QASQPTTRLA  300
ISSSSTSASS QLQFMAPISQ PTAFFQPHQQ PIQSSDMTRD YWEYSQLLQN PGDFFDQQQP  360
SGLLEQMFFA SSRAVLHSNT TSSLGNSAAS SPSYPLLFSG QQSSYYRPQT NQIQGNSSSS  420
NSSSSNISAP FWSSSSHYPP SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23222283163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218223ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792227.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
RefseqXP_016507834.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A1S4D3I20.0A0A1S4D3I2_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A1U7XJI90.0A0A1U7XJI9_NICSY; ethylene-responsive transcription factor ABR1-like isoform X1
STRINGXP_009792227.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.15e-16ERF family protein