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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016507766.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HB-PHD | ||||||||
Protein Properties | Length: 701aa MW: 79227.2 Da PI: 7.8435 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 42.1 | 1.5e-13 | 480 | 524 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +eeL ++F++n ps+e+re L+k+lgL+ ++V WF+N R+ XP_016507766.1 480 PDAVEELRRAFAENELPSREMRENLSKQLGLESEKVNKWFKNARY 524 6889***************************************97 PP | |||||||
2 | PHD | 34.8 | 3.7e-12 | 208 | 263 | 1 | 51 |
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ +++ +++++lCd +C+ +fH+kCl+++l++e++p + w+C+ Ck+k XP_016507766.1 208 ICAKCKLQEAfpDNDIILCDgTCNCAFHQKCLDPPLSTENIPPDdeGWFCKFCKCK 263 588898844445********56*******************99999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 3.32E-14 | 200 | 266 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 2.6E-11 | 204 | 264 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.211 | 206 | 263 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 2.5E-9 | 208 | 261 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 3.0E-9 | 208 | 263 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 209 | 260 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd15504 | 6.48E-29 | 209 | 260 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-15 | 456 | 523 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.524 | 469 | 529 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-12 | 471 | 533 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-12 | 472 | 537 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.49E-11 | 472 | 532 | No hit | No description |
Pfam | PF00046 | 5.1E-11 | 480 | 524 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MAGKTNKDMH KTVANLSQVK DALRRLGKKR SKLKSKSHGR AARASSSKRT VAGEGKRTEI 60 PQKAKSSKKQ SKLSCQGKKL QACNSKDNLK HENLDTGSEK LKKRRRKKRK HNADPDDVSR 120 LQRRTRYLLI KMKLEQNLID AYSAEGWKGQ SREKIRPERE LQRAKKQILN CKLGIREIVH 180 RLDLLSSPGQ IEDSAIAPDG SVHHEHIICA KCKLQEAFPD NDIILCDGTC NCAFHQKCLD 240 PPLSTENIPP DDEGWFCKFC KCKMEIIDAT NAHIGTHFAM DSNWEDIFKE EALLPEGGES 300 LLCAEQDWPS DDSEDDDYDP EKIAYSHSST DSFESGSSSE ASSASMLGSL EDELLALTGK 360 PEDGSSGKDY LSEQSAGLDY EETTDFEVLS GPRQRKAVDY IKLNDEMFGK HAPAIEQNSE 420 DEDWGPGKRK RRRKESESDA ASTLITLLES EKSCPEKRAD DEEKESFDKP AKRAIFRIPP 480 DAVEELRRAF AENELPSREM RENLSKQLGL ESEKVNKWFK NARYMALKAR KQVESAEPCQ 540 VTSPTTSEGC VSETVKDKPA DQISSRDEEE NVAHACNLER SPNEETANLM ISTSKKKHGK 600 KAVKPSIDKL ETTVEFGDDV SLKLLRERAK KERRKLNSKE RERIQEAEAE MQKLCGIKNK 660 IARLHDVLLR LPNCRFRRAD ASRVDESSVI FVPVAELQEK R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 109 | LKKRRRKKRK |
2 | 101 | 106 | KKRRRK |
3 | 101 | 108 | KKRRRKKR |
4 | 101 | 109 | KKRRRKKRK |
5 | 103 | 108 | RRRKKR |
6 | 103 | 109 | RRRKKRK |
7 | 427 | 432 | KRKRRR |
8 | 427 | 433 | KRKRRRK |
9 | 428 | 432 | RKRRR |
10 | 428 | 434 | RKRRRKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 1e-128 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HG975519 | 1e-128 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016507766.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein-like isoform X1 | ||||
Refseq | XP_016507768.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein-like isoform X1 | ||||
Refseq | XP_016507769.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein-like isoform X1 | ||||
Swissprot | P48785 | 1e-148 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A1S4D306 | 0.0 | A0A1S4D306_TOBAC; pathogenesis-related homeodomain protein-like isoform X1 | ||||
STRING | XP_009597605.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10684 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 3e-99 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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