PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016507682.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 448aa MW: 51002 Da PI: 4.923 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.3 | 1.7e-09 | 17 | 59 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+++ +k+++++C ++ +lC++C ++ H+ H++v XP_016507682.1 17 RACDNCIRKRARWYCPADDAFLCQNCDSSVHSAnplarrHERV 59 78*****************************667888888876 PP | |||||||
2 | CCT | 67.9 | 2.8e-23 | 395 | 438 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_016507682.1 395 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 438 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.836 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-11 | 14 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.52E-11 | 17 | 61 | No hit | No description |
Pfam | PF00643 | 8.6E-8 | 17 | 59 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.083 | 395 | 437 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.0E-18 | 395 | 437 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 448 aa Download sequence Send to blast |
MVSERKLASA MGGKTVRACD NCIRKRARWY CPADDAFLCQ NCDSSVHSAN PLARRHERVR 60 LKTSSLKESS PDENFPNLES PVSVSVSVSV PSWHRGFTRK ARTPRNGRKV SKSTEEEEEE 120 EVILKNPIHL VPEILSDENS LDENEEQLLY RVPIFDPFVA ELYTSATRND RMENVQTAKA 180 DSEFKPESKE TLQHDDNICN GDLNRFHGML PSEMELAEFA ADVENLLGKG LDDESFDMEG 240 LGLLGGCNKE ENSMECSMVS IHEKVKIEDE GEGDEVVMDT TTTNHDIDIN GDTFEFKFDY 300 DSPMNINGGD EVGEVVMKIN GEDGDGNYNE KKKILLNLDY ESVLTAWADQ RSPWTNGERP 360 ELDSNDCWPD CMGNCGTIHP YGIMNGHTTI IDRGREARVS RYREKRRTRL FSKKIRYEVR 420 KLNAEKRPRM KGRFVKRSNL VPNYPLLK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 405 | 421 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016507682.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A1S4D2N6 | 0.0 | A0A1S4D2N6_TOBAC; zinc finger protein CONSTANS-LIKE 16-like | ||||
STRING | XP_009777706.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25440.1 | 5e-96 | B-box type zinc finger protein with CCT domain |