PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507682.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 448aa    MW: 51002 Da    PI: 4.923
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.31.7e-091759440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    r C+++ +k+++++C  ++ +lC++C ++ H+       H++v
  XP_016507682.1 17 RACDNCIRKRARWYCPADDAFLCQNCDSSVHSAnplarrHERV 59
                    78*****************************667888888876 PP
2CCT67.92.8e-23395438144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  XP_016507682.1 395 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 438
                     9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8361461IPR000315B-box-type zinc finger
SMARTSM003361.3E-111461IPR000315B-box-type zinc finger
CDDcd000217.52E-111761No hitNo description
PfamPF006438.6E-81759IPR000315B-box-type zinc finger
PROSITE profilePS5101716.083395437IPR010402CCT domain
PfamPF062036.0E-18395437IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MVSERKLASA MGGKTVRACD NCIRKRARWY CPADDAFLCQ NCDSSVHSAN PLARRHERVR  60
LKTSSLKESS PDENFPNLES PVSVSVSVSV PSWHRGFTRK ARTPRNGRKV SKSTEEEEEE  120
EVILKNPIHL VPEILSDENS LDENEEQLLY RVPIFDPFVA ELYTSATRND RMENVQTAKA  180
DSEFKPESKE TLQHDDNICN GDLNRFHGML PSEMELAEFA ADVENLLGKG LDDESFDMEG  240
LGLLGGCNKE ENSMECSMVS IHEKVKIEDE GEGDEVVMDT TTTNHDIDIN GDTFEFKFDY  300
DSPMNINGGD EVGEVVMKIN GEDGDGNYNE KKKILLNLDY ESVLTAWADQ RSPWTNGERP  360
ELDSNDCWPD CMGNCGTIHP YGIMNGHTTI IDRGREARVS RYREKRRTRL FSKKIRYEVR  420
KLNAEKRPRM KGRFVKRSNL VPNYPLLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1405421RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507682.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A1S4D2N60.0A0A1S4D2N6_TOBAC; zinc finger protein CONSTANS-LIKE 16-like
STRINGXP_009777706.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-96B-box type zinc finger protein with CCT domain