PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507616.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 25617.9 Da    PI: 9.3257
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507616.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifsstg+lyeyss
  XP_016507616.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYEYSS 59
                    8***********************************************96 PP
2K-box86.45.7e-2981170998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     + +++   +q+e+a L+++++nLq+++R+++Ge+L+ Ls+k+Lq+Le+qLe sl+ +R +K+e+l+++i+el +k + +++en++L kk+
  XP_016507616.1  81 TPTSEVRFWQREAAMLRQQLQNLQENHRQMMGEQLSGLSVKDLQNLENQLEMSLRGVRVRKDEILIDEIQELNRKGNLIHQENMELYKKV 170
                     5678899*******************************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.819161IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-33291IPR002100Transcription factor, MADS-box
CDDcd002654.42E-46278No hitNo description
PRINTSPR004042.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014869.7E-2883170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.62186176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYEYSST  60
SMKSVIERYN KTKEENHQLA TPTSEVRFWQ REAAMLRQQL QNLQENHRQM MGEQLSGLSV  120
KDLQNLENQL EMSLRGVRVR KDEILIDEIQ ELNRKGNLIH QENMELYKKV YGNRDANGVS  180
GNSLAPNSLS INEDPHAPVH LQLSQPQQQN YDTSGTTELG LQLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21174174MEF2C
5f28_B5e-21174174MEF2C
5f28_C5e-21174174MEF2C
5f28_D5e-21174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754433e-51HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755163e-51HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595410.11e-165PREDICTED: MADS-box transcription factor 23-like isoform X3
RefseqXP_016507616.11e-165PREDICTED: MADS-box transcription factor 23-like isoform X6
SwissprotQ6EP491e-105MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S4D2K81e-164A0A1S4D2K8_TOBAC; MADS-box transcription factor 23-like isoform X6
STRINGXP_009595408.11e-161(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-101AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]