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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_016507553.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
bHLH |
Protein Properties |
Length: 337aa MW: 38245.1 Da PI: 5.0141 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_016507553.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 36.6 | 8.2e-12 | 169 | 212 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L
XP_016507553.1 169 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 212
589*********************66......****************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MELTQQDFLE ELLSPRIESW NSFTSGVKEL FPNAWNIESS SFYQQNPEFI AQNSSLLELI 60 SPAESSFPCP AFTPQESYPF LDAFITAPAE VDSTNYIQEE YSNRATVEEG EGVGLISTDF 120 HGHIGLGQDS SCFNNKVKME EAASRINNMG EKKSSTKVKK VEGQPSKNLM AERRRRKRLN 180 DRLSMLRSIV PKISKMDRTS ILGDTIDYMK ELIDKIHRLR EDHEMEDETK DRKFMGNYKE 240 LKPNEAFVKN PPKFDVERRN EETRIEICCA AKPGLVLSTV STIEALGLDV QQCVVSCFSD 300 FSMRASCSEA TEHRTILRSE DVQQALFKTA GYGGRCL
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 171 | 178 | ERRRRKRL |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]
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