PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016507452.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 362aa MW: 39624 Da PI: 9.3454 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.2 | 1.2e-14 | 100 | 190 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ +++Liea + +l+rg+l++++W+ev++++ + ++ r+ +qCk++++ l+k+yk +k++ ++ + + s +p+f+ l+ XP_016507452.1 100 CWSEAATHTLIEAWGSHYLELKRGNLRQKHWQEVANAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKIEKARVSQSHGRYASPWPFFNGLD 190 7*************************************999987778889**********************9999999999******998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.1E-25 | 98 | 192 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MCRRPTSILL TLPSLLLLLN LIPPPPFTKF NSVVAVSPST PMSDDDLVAS PSSNNNSPSP 60 PPSPSSPPPS TNNELVNSLP PSTIPPASTR PAAFPAREDC WSEAATHTLI EAWGSHYLEL 120 KRGNLRQKHW QEVANAVNAL HGHTKKQYRT DIQCKNRIDT LKKKYKIEKA RVSQSHGRYA 180 SPWPFFNGLD ALIGDNFKPS PAPVTVASRR KTPPMLLPPP SAVPVGPRSK RPAAAMEDAV 240 SRRNFSAMAA AAAAAAVSEE SDEEEESETS SPAAISLTGA RKEESGALAE GCSRLAEAIG 300 RFAEIYERVE DAKQRQMVEL EKQRMQFAKD LEIQRMKLIM ESQVQLEKLK RAKSNSQADG 360 YL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB072391 | 0.0 | AB072391.1 Nicotiana tabacum NtSIP1 mRNA for 6b-interacting protein 1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760894.1 | 0.0 | PREDICTED: uncharacterized protein LOC104213156 | ||||
Refseq | XP_016507452.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A1S4D204 | 0.0 | A0A1S4D204_TOBAC; trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A1U7VEZ5 | 0.0 | A0A1U7VEZ5_NICSY; uncharacterized protein LOC104213156 | ||||
STRING | XP_009760894.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1318 | 23 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 4e-72 | sequence-specific DNA binding transcription factors |