PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507382.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 180aa    MW: 20076.4 Da    PI: 4.7746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507382.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-201869156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f+t+e+Aa+a++ a++ l+g+
  XP_016507382.1 18 SPYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFDTPEMAAAAYDSAALHLKGH 69
                    68*****999.**********8...557***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-221877IPR016177DNA-binding domain
PROSITE profilePS5103222.7611976IPR001471AP2/ERF domain
SMARTSM003808.3E-351982IPR001471AP2/ERF domain
PRINTSPR003672.7E-102031IPR001471AP2/ERF domain
CDDcd000187.65E-222078No hitNo description
PfamPF008472.4E-132069IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-322077IPR001471AP2/ERF domain
PRINTSPR003672.7E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEGNNNTSKP SRRGGVTSPY RGVRKRKWGK WVSEIREPGK KTRIWLGSFD TPEMAAAAYD  60
SAALHLKGHA AKLNFPELVD FLPKPASCSP DDIRFAAQEA ALTVKRNSEE MASSSATNNL  120
APVTIGLSPS QIQAINDFPM DSPKMWSDVT REYVGEETMF TCNDYEMSDY EEIDDCLWDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-162080667ATERF1
3gcc_A1e-162080667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757757.11e-134PREDICTED: ethylene-responsive transcription factor ERF021-like
RefseqXP_016507382.11e-134PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I21e-52ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A1S4D1T31e-132A0A1S4D1T3_TOBAC; ethylene-responsive transcription factor ERF021-like
TrEMBLA0A1U7UNP01e-132A0A1U7UNP0_NICSY; ethylene-responsive transcription factor ERF021-like
STRINGXP_009757757.11e-133(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.14e-43ERF family protein