PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016507116.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GeBP

Protein Properties

Length: 462aa MW: 50928.1 Da PI: 5.4643

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016507116.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	112.4	2.9e-35	147	249	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 klfqrlw++eDei lLqG++d+++++g + + d++afy+++k++ +++++k+qlveK+rrLKkK+++ ++k+ sgke++f+++hd+ +f XP_016507116.1 147 KLFQRLWTDEDEIELLQGFLDYTTQRGLnnsstpQHHYDTTAFYDQIKSKFQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSAHDHATF 241 579**********************98766444455***************************************************** PP DUF573 90 elskkiWg 97 e+s+kiW XP_016507116.1 242 EISRKIWT 249 *****6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.0E-33	149	248	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MNQWLCFGKG FSESVVLCLL CGEEHVDIEK PTGIHESAYA LSNLRNWIRH SKVSEISLCR 60 QDHHHHQPVY NDDNLDDDVD VDGDDDSTSS PSLAGEVTIA VSGVGVSPSD SLALYPDLKR 120 RRLDDFTIPV ILPEKKPSAT FDDSQRKLFQ RLWTDEDEIE LLQGFLDYTT QRGLNNSSTP 180 QHHYDTTAFY DQIKSKFQLD FNKNQLVEKL RRLKKKYRTV MSKMGSGKEF VFKSAHDHAT 240 FEISRKIWTN VGSAVRGGAN GVAGAVVLYA PPEDGGLDDD DAHVNPNPYA NDLIDHSPKF 300 NLNSNPNGID IKTPRSRKRS PAASTEAVKV EQQPYQPSGG STTVPLAAEP VSGVAATATA 360 TVAASMPSLI EETVRNCVSP IFKELLNSVA NLNGPSRGLG FGGMGMSPIP LGFGGGAMSM 420 EMMGDEKWRK QQMLELEVYS KRLELVQDQI KAQLEELRSM GS

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MNQWLCFGKG FSESVVLCLL CGEEHVDIEK PTGIHESAYA LSNLRNWIRH SKVSEISLCR  60
QDHHHHQPVY NDDNLDDDVD VDGDDDSTSS PSLAGEVTIA VSGVGVSPSD SLALYPDLKR  120
RRLDDFTIPV ILPEKKPSAT FDDSQRKLFQ RLWTDEDEIE LLQGFLDYTT QRGLNNSSTP  180
QHHYDTTAFY DQIKSKFQLD FNKNQLVEKL RRLKKKYRTV MSKMGSGKEF VFKSAHDHAT  240
FEISRKIWTN VGSAVRGGAN GVAGAVVLYA PPEDGGLDDD DAHVNPNPYA NDLIDHSPKF  300
NLNSNPNGID IKTPRSRKRS PAASTEAVKV EQQPYQPSGG STTVPLAAEP VSGVAATATA  360
TVAASMPSLI EETVRNCVSP IFKELLNSVA NLNGPSRGLG FGGMGMSPIP LGFGGGAMSM  420
EMMGDEKWRK QQMLELEVYS KRLELVQDQI KAQLEELRSM GS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	122	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	3e-47	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016507116.1	0.0	PREDICTED: uncharacterized protein LOC107824825
TrEMBL	A0A1S4D151	0.0	A0A1S4D151_TOBAC; uncharacterized protein LOC107824825
STRING	XP_009591277.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4052	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-75	DNA-binding storekeeper protein-related transcriptional regulator