PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 358aa MW: 39276.9 Da PI: 8.6973

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016507066.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	111.7	3.7e-35	69	126	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+ee XP_016507066.1 69 VVIYKECLKNHAASLGGHAVDGCGEFMPSPTANpADPTSLKCAACGCHRNFHRREPEE 126 589****************************9*******************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.5E-29	70	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.243	72	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-23	72	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-31	72	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	3.5E-29	208	276	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.36E-18	209	276	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.0E-26	215	272	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MDLTNNTSTT TTTTPTLTNT TTITTTSAHI KTPEAEIETP TQIQKPKPFS FSNGVLKRKN 60 LFQHHHPVVV IYKECLKNHA ASLGGHAVDG CGEFMPSPTA NPADPTSLKC AACGCHRNFH 120 RREPEEPVVI PPPPIATAAL EYQPHHRHHP PPPPPPLPRG DHSSPNSPSP PPISSAYYPA 180 SAPHMLLALS AGFSGEKNHN PISSPVVNTT NSNGRKRFRT KFTPDQKVKM LEFAERVGWK 240 MQKRDEDLVR SFCNEIGVEK GVLKVWMHNN KNTFGKKLDQ HHLADININN NGNSTNVVNG 300 FCIVSRNNNS HHHNSTDSAE FHLHHHESSN DDNKIIDHIK SVSTANVVVG TNGSSSSS

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MDLTNNTSTT TTTTPTLTNT TTITTTSAHI KTPEAEIETP TQIQKPKPFS FSNGVLKRKN  60
LFQHHHPVVV IYKECLKNHA ASLGGHAVDG CGEFMPSPTA NPADPTSLKC AACGCHRNFH  120
RREPEEPVVI PPPPIATAAL EYQPHHRHHP PPPPPPLPRG DHSSPNSPSP PPISSAYYPA  180
SAPHMLLALS AGFSGEKNHN PISSPVVNTT NSNGRKRFRT KFTPDQKVKM LEFAERVGWK  240
MQKRDEDLVR SFCNEIGVEK GVLKVWMHNN KNTFGKKLDQ HHLADININN NGNSTNVVNG  300
FCIVSRNNNS HHHNSTDSAE FHLHHHESSN DDNKIIDHIK SVSTANVVVG TNGSSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-21	216	273	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009787877.1	0.0	PREDICTED: zinc-finger homeodomain protein 9-like
Refseq	XP_016507066.1	0.0	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	5e-72	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A1S4D0Z9	0.0	A0A1S4D0Z9_TOBAC; zinc-finger homeodomain protein 9-like
TrEMBL	A0A1U7X6Z9	0.0	A0A1U7X6Z9_NICSY; zinc-finger homeodomain protein 9-like
STRING	XP_009787877.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	1e-65	homeobox protein 34

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]