PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506032.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 547aa    MW: 60813.9 Da    PI: 5.6252
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506032.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.6e-16228287155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++t+e+Aa+a++ a++k++g
  XP_016506032.1 228 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDTEEKAARAYDLAALKYWG 287
                     78*******************655454478446*************************98 PP
2AP246.58.9e-15332381355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_016506032.1 332 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 381
                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-13228287IPR001471AP2/ERF domain
CDDcd000184.26E-23228295No hitNo description
SuperFamilySSF541711.05E-17228297IPR016177DNA-binding domain
SMARTSM003802.3E-30229301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-17229296IPR001471AP2/ERF domain
PROSITE profilePS5103219.809229295IPR001471AP2/ERF domain
PRINTSPR003671.2E-6230241IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18330391IPR016177DNA-binding domain
CDDcd000182.48E-25330391No hitNo description
SMARTSM003802.1E-34331395IPR001471AP2/ERF domain
PROSITE profilePS5103219.137331389IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18331389IPR001471AP2/ERF domain
PfamPF008471.7E-9332381IPR001471AP2/ERF domain
PRINTSPR003671.2E-6371391IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MSTWLGFSLT PDFNIGDDDE EEEVIKDYQS RNENQATGND ANSVEETHLS VMPSYPFPRC  60
DTTTEDCWRY ENHEMTSATN PGEEGPKLED FLGCCCSNSP PDNEQQIADI NVNIPPTINP  120
SDHEQQFQVM IPNGQFQSSN EFANSTTGSV YHLPFDGATS VSGFKSWLRQ SVAAAPLISS  180
AEENSTNNCQ TLSLAAAPKK RPVAVKNVTG SREPVPRKSI DTFGQRTSQY RGVTRHRWTG  240
RYEAHLWDNS CRKEGQTRKG RQVYLGGYDT EEKAARAYDL AALKYWGPTT HINFPLNTYE  300
KELEEMKHMN RQEFVAHLRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  360
TFSTQEEAAE AYDIAAIKFR GTSAVTNFDI SRYDVKRICS SSTLIASDLA KRSPSKDSGV  420
SPSSFEDYNN SCTSLPQPIL AITNGEQLQQ PADNSFMDMV PLMTAGSSSR SSSSAQSPKC  480
SGSGSAEMSC DFGVGLEYPQ AYYSSINIQG HKFEDERKGN DENPQSSGRI GNMDLVHPVP  540
MFALWNQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763770.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
RefseqXP_016506032.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-139AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1S4CY190.0A0A1S4CY19_TOBAC; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1U7VPF30.0A0A1U7VPF3_NICSY; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_009763770.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-133AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]