PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016505998.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 563aa MW: 63765.6 Da PI: 6.9666

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016505998.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28	3.8e-09	482	520	18	54
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e++ LA k gLt +qV++WF N R + XP_016505998.1 482 MFQNflHPYPKDAEKQLLAVKSGLTRSQVSNWFINARVR 520 5887779******************************88 PP
2	BELL	73.3	3.8e-24	355	422	3	71
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 ++ ++kk +L+ ll+ Vd++Y+q+ +++++vis+F+av++l++ +++++Al++iS +++L+++i++ XP_016505998.1 355 MNSEAKKKHLVALLQVVDDQYNQCLDEIHMVISAFHAVTELNP-SIHARFALQTISSLYKNLRERISNY 422 56799************************************.9*******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.1E-17	289	421	IPR006563	POX domain
Pfam	PF07526	6.7E-25	295	420	IPR006563	POX domain
PROSITE profile	PS50071	11.224	461	524	IPR001356	Homeobox domain
SMART	SM00389	5.5E-7	464	528	IPR001356	Homeobox domain
CDD	cd00086	2.97E-11	464	525	No hit	No description
SuperFamily	SSF46689	1.59E-15	466	533	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-26	467	530	IPR009057	Homeodomain-like
Pfam	PF05920	4.1E-15	481	520	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MAEPHTIIDE NFLHTASIPI SFPDRVGLNN QNHVMDGQNH IMDGHEIPIP FMLQGEAINS 60 SQDFLSLPNF PRAVDTGAIH SVLPMRNRIK EFSLSTSYPI NNAYTEDQYM EGIPISAVSL 120 ANLLATRNAM PENHENLAAL ASLSHPVEGH KTDVLDYPTM LNHSFGSYRN YEFDGVPEIA 180 GTIVGRTGSQ PFQLSHENVN SNTWFSSETA SMNSDSPSGS SSRFSNELSL SLTSTQSGVA 240 CGTTIRDQCS DISCSGVTNH AFPQRRFDSE LTSCNSRNLS LNFGSYKPVH LSQFLTGSRY 300 LRVMQEILSE MAHLSLQNHN LVGYRGNGAE YGANTSFTLS SDDLPDEDRR IIGQMNSEAK 360 KKHLVALLQV VDDQYNQCLD EIHMVISAFH AVTELNPSIH ARFALQTISS LYKNLRERIS 420 NYILAMGEHF NRGGERGVEK SFETSFIQKQ WALQQLKRKD HQLWRPQRGL PERSVSVLRA 480 WMFQNFLHPY PKDAEKQLLA VKSGLTRSQV SNWFINARVR LWKPMIEEMY AEMNRRKIRT 540 GNHEDETNNR RNHKIDNRLF TMK

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MAEPHTIIDE NFLHTASIPI SFPDRVGLNN QNHVMDGQNH IMDGHEIPIP FMLQGEAINS  60
SQDFLSLPNF PRAVDTGAIH SVLPMRNRIK EFSLSTSYPI NNAYTEDQYM EGIPISAVSL  120
ANLLATRNAM PENHENLAAL ASLSHPVEGH KTDVLDYPTM LNHSFGSYRN YEFDGVPEIA  180
GTIVGRTGSQ PFQLSHENVN SNTWFSSETA SMNSDSPSGS SSRFSNELSL SLTSTQSGVA  240
CGTTIRDQCS DISCSGVTNH AFPQRRFDSE LTSCNSRNLS LNFGSYKPVH LSQFLTGSRY  300
LRVMQEILSE MAHLSLQNHN LVGYRGNGAE YGANTSFTLS SDDLPDEDRR IIGQMNSEAK  360
KKHLVALLQV VDDQYNQCLD EIHMVISAFH AVTELNPSIH ARFALQTISS LYKNLRERIS  420
NYILAMGEHF NRGGERGVEK SFETSFIQKQ WALQQLKRKD HQLWRPQRGL PERSVSVLRA  480
WMFQNFLHPY PKDAEKQLLA VKSGLTRSQV SNWFINARVR LWKPMIEEMY AEMNRRKIRT  540
GNHEDETNNR RNHKIDNRLF TMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-14	470	528	5	63	Homeobox protein Meis2
3k2a_B	1e-14	470	528	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:17908157}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009590101.2	0.0	PREDICTED: homeobox protein ATH1
Refseq	XP_016505998.1	0.0	PREDICTED: homeobox protein ATH1-like
Swissprot	P48731	1e-104	ATH1_ARATH; Homeobox protein ATH1
TrEMBL	A0A1S4CXY0	0.0	A0A1S4CXY0_TOBAC; homeobox protein ATH1-like
STRING	XP_009590101.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8261	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	1e-103	homeobox gene 1

Publications ? help Back to Top
Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]